View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_24 (Length: 309)
Name: NF17072_low_24
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 49000364 - 49000075
Alignment:
| Q |
1 |
atactaatttatttgactccttgaagccatgtaagtttcaaaattagtcaaaagccaaaatcaaagatagatcacccgaaagtttctctcaccctcacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49000364 |
atactaatttatttgactccttgaagccatgtaagtttcaaaattagtcaaaagtcaaaatcaaagatagatcacccgaaagtttctctcatcctcacaa |
49000265 |
T |
|
| Q |
101 |
taaaaatattgcatccactcacaatctcatgcacccatgcgagactcaatgtcctctcttcattagattttgttctatgaaatctccaaacccaagattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49000264 |
taaaaatattgcatccactcacaatctcatgcacc-atgcgagactcaatgtcctctcttcattagattttgttctatgaaatctccaaacccaagattt |
49000166 |
T |
|
| Q |
201 |
ctttcaaaacaagaaaaaccttgcttgtgtttcttttaagacaggatggtcttcaggagtttcaattctcgtgtagttgtcatactccttg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49000165 |
ctttcaaaacaagaaaaaccttgcttgtgtttcttttaagacaggatggtcttcaggagtttcaattctcgtgtagttgtcatactccttg |
49000075 |
T |
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