View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_low_25 (Length: 304)

Name: NF17072_low_25
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_low_25
NF17072_low_25
[»] chr8 (1 HSPs)
chr8 (16-294)||(8103901-8104191)
[»] chr7 (3 HSPs)
chr7 (241-282)||(46578122-46578163)
chr7 (233-277)||(20337346-20337390)
chr7 (245-282)||(26018088-26018125)
[»] chr1 (1 HSPs)
chr1 (237-282)||(40861247-40861292)
[»] chr6 (1 HSPs)
chr6 (244-282)||(5522624-5522662)
[»] chr3 (3 HSPs)
chr3 (233-287)||(1796027-1796081)
chr3 (248-282)||(26550288-26550322)
chr3 (237-282)||(9692765-9692810)
[»] chr2 (1 HSPs)
chr2 (237-281)||(16447234-16447278)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 8104191 - 8103901
Alignment:
Q  16 caatttaatggtttaatcaatctcaaatttaatccagctgctcaatgtagctagcatagaacagagtctatcaactaaaactaaactctttttgctgaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8104191 caatttaatggtttaatcaatctcaaatttaatccagctgctcaatgtagctagcatagaacagagtccatcaactaaaactaaactctttttgctgaca 8104092  T
Q  116 tgaaatccaataatgcagcaaatcacataagcaacacaactccaactattcacggttccacgccccatcatacatgacgactgcattccaaacaaaaatg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8104091 tgaaatccaataatgcagcaaatcacataagcaacacaactccaactattcacggttccacgccccatcatacatgacgactgcattctaaacaaaaatg 8103992  T
Q  216 acaatttctaccatcaa------------tttatgataattttatctctcatcttcacattataattttactttctctccttatccctttg 294  Q
    ||||||||||| |||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8103991 acaatttctactatcaatttgtgataatttttatgataattttatctctcatcttcacattataattttactttctctccttatcgctttg 8103901  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 46578163 - 46578122
Alignment:
Q  241 aattttatctctcatcttcacattataattttactttctctc 282  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  46578163 aattttatctctcatattcacattatcattttactttctctc 46578122  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 20337346 - 20337390
Alignment:
Q  233 tttatgataattttatctctcatcttcacattataattttacttt 277  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||    
T  20337346 tttatgataattttctctctcatattcacattatatttttacttt 20337390  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 26018088 - 26018125
Alignment:
Q  245 ttatctctcatcttcacattataattttactttctctc 282  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  26018088 ttatctctcatattcacattatatttttactttctctc 26018125  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 40861292 - 40861247
Alignment:
Q  237 tgataattttatctctcatcttcacattataattttactttctctc 282  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||    
T  40861292 tgataattttatctctcatattcacattatctttttactttctctc 40861247  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 5522662 - 5522624
Alignment:
Q  244 tttatctctcatcttcacattataattttactttctctc 282  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  5522662 tttatctctcatattcacattatacttttactttctctc 5522624  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 1796081 - 1796027
Alignment:
Q  233 tttatgataattttatctctcatcttcacattataattttactttctctccttat 287  Q
    |||||||||||||| |||||||| ||||||||||  |||||| ||||||| ||||    
T  1796081 tttatgataattttctctctcatgttcacattatgtttttacattctctctttat 1796027  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 26550288 - 26550322
Alignment:
Q  248 tctctcatcttcacattataattttactttctctc 282  Q
    |||||||| ||||||||||||||||||||||||||    
T  26550288 tctctcatattcacattataattttactttctctc 26550322  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 9692765 - 9692810
Alignment:
Q  237 tgataattttatctctcatcttcacattataattttactttctctc 282  Q
    |||||| ||| |||||||| |||||||||| |||||||||||||||    
T  9692765 tgataactttctctctcatattcacattatcattttactttctctc 9692810  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 16447278 - 16447234
Alignment:
Q  237 tgataattttatctctcatcttcacattataattttactttctct 281  Q
    |||||||||| |||||||| ||||||||||| ||||| |||||||    
T  16447278 tgataattttctctctcatattcacattatatttttattttctct 16447234  T

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