View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_26 (Length: 296)
Name: NF17072_low_26
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 38892620 - 38892868
Alignment:
| Q |
18 |
agtttaacattacacgtgtgtgtggataaatatattagcttataatggattagatttaacagtgaacctttgctcattgcattatatcgatcgggaaaga |
117 |
Q |
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| T |
38892620 |
agtttaacattacacgtgtgtgtggataaatatattagcttataatggattagatttaacagtgaacctttgctcattgcattatatcgatcgggaaaga |
38892719 |
T |
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| Q |
118 |
aaacatacggatcaaaataacaagaggcatatgtcacactcacnnnnnnnnnnnnnnnnnnnnngtgaacctatgttctttagttttaagttttgactgc |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38892720 |
aaacatacggatcaaaataacaagaggcttatgtcacactcacaaaaaagggcaaagtaaaaaagtgaacctatgttctttagttttaagttttgactgc |
38892819 |
T |
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| Q |
218 |
ggcactcacggcgttaaaattttgtttgtgttcttttggttacatgaga |
266 |
Q |
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| T |
38892820 |
ggcactcacggcgttaaaattttgtttgtgttcttttggttacatgaga |
38892868 |
T |
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