View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_27 (Length: 295)
Name: NF17072_low_27
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 47579783 - 47579519
Alignment:
| Q |
18 |
atcacccatatgaaccaaatcagcaataaaataaacatggaaatgaacattagcaacaccaacaacaaaaatggagcatgnnnnnnnnngtacacatgaa |
117 |
Q |
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| T |
47579783 |
atcacccatatgaaccaaatcagcaataaaataaacatggaaatgaacattagtaacaccaacaacaaaaatggagcatgaaaaaaaa-gtacacatgaa |
47579685 |
T |
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| Q |
118 |
cctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatcg |
217 |
Q |
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| T |
47579684 |
cctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatcg |
47579585 |
T |
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| Q |
218 |
ggttccgaataaagattgaagaaacgtgcttagtccggaaacaaacaacgtactctgaatcacctt |
283 |
Q |
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| T |
47579584 |
ggttccgaataaagattgaagaaacgtgctcagtccagaaacaaacaacgtactctgaatcacctt |
47579519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 8683382 - 8683237
Alignment:
| Q |
117 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
216 |
Q |
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|||||||||||||||||||||| | | ||||||||||| |||||| || || || ||||| |||||| ||||||||||||||| |||| ||||||||| |
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| T |
8683382 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
8683283 |
T |
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| Q |
217 |
gggttccgaataaagattgaagaaacgtgcttagtccggaaacaaa |
262 |
Q |
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| T |
8683282 |
gagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaa |
8683237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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