View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_30 (Length: 272)
Name: NF17072_low_30
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 40617015 - 40617273
Alignment:
| Q |
1 |
agctgcagatccatccacaatattgttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcg |
100 |
Q |
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| T |
40617015 |
agctgcagatccatccacaatattgttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcg |
40617114 |
T |
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| Q |
101 |
gtcacagtcctcccgttcgacgccctaattctaataaattttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40617115 |
gtcacagtcctcccgttcgacgccctaattctaataaattttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttccgagt |
40617214 |
T |
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| Q |
201 |
tgctatggaatatctcatcgcactgagaagcacctcctccgtctcctcctgttaaatat |
259 |
Q |
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| T |
40617215 |
tgctatggaatatctcatcgcactgagaagcacctcctccgtctcctcctgttaaatat |
40617273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 40627731 - 40627971
Alignment:
| Q |
6 |
cagatccatccacaatattgttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcac |
105 |
Q |
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| T |
40627731 |
cagatccatccacaatattgttatgacaaggtggctgacctgcgtgttccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcac |
40627830 |
T |
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| Q |
106 |
agtcctcccgttcgacgccctaattctaataaattttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgcta |
205 |
Q |
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| T |
40627831 |
actcctcccgttcctcgccgtgattctaatcatttttccacatcttgaacctccgttgtaccacccagtggacaaagccaccactctttccgagttgtcg |
40627930 |
T |
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| Q |
206 |
tggaatatctcatcgcactgagaagcacctcctccgtctcc |
246 |
Q |
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| T |
40627931 |
tggtatttttcatcgcattgagacggacctcctccgtctcc |
40627971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 40610520 - 40610633
Alignment:
| Q |
1 |
agctgcagatccatccacaatattgttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| | |||||| || |||||||| ||||||||||||||||||| || ||||| ||||| |
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| T |
40610520 |
agctacagatccatccacaatattgttacgacaaggtggctgccatgcatgctcctcatcacaaccattcactgaatcacattcatccaccaccttcgcc |
40610619 |
T |
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| Q |
101 |
gtcacagtcctccc |
114 |
Q |
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|||||| ||||||| |
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| T |
40610620 |
gtcacactcctccc |
40610633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 40641337 - 40641268
Alignment:
| Q |
141 |
ttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaa |
210 |
Q |
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||||||||||||||||||| ||||||| ||||| || | ||||| | ||||||||||| ||||||||| |
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| T |
40641337 |
ttccacaccttgaacctccgttgtaccacccagtggacagcgccactactctttctgagtagctatggaa |
40641268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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