View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_34 (Length: 249)
Name: NF17072_low_34
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4769293 - 4769053
Alignment:
| Q |
1 |
cctccatgatcactactctcatatatagcatgctaattactatcttgctaccttcttcagacaatttcaactacctagctccaccatagtaaatgaatca |
100 |
Q |
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| T |
4769293 |
cctccatgatcactactctcatatatagcatgctaattactatcttgctaccttcttcagacaatttcaactacctagctccaccatagtaaatgaatca |
4769194 |
T |
|
| Q |
101 |
aaaagtcataatgtacattgtcattatgaggattatgtgtgttgaaattttcaatagagataccaaaaatcat-agatacattatatgatatattttagt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4769193 |
aaaagtcataatgtacattgtcattatgaggattatgtgtgttgaaattttcaatagagataccaaaaatcataagatacattatatgatatattttagt |
4769094 |
T |
|
| Q |
200 |
ctagtaaaaaatacaaaaatatgtgacacatttagaataat |
240 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
4769093 |
ctagtaaaaactacaaaaatatgtgacacatttagaataat |
4769053 |
T |
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