View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_35 (Length: 245)
Name: NF17072_low_35
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_35 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 25247860 - 25247621
Alignment:
| Q |
6 |
cacagaggaagaaaaagaatactcttccaaagaatattttgggcaatcatggtattcctcttcatagtcctactaacaattctcctcatatgggcaatcc |
105 |
Q |
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| T |
25247860 |
cacaaaggaagaaaaagaatactcttccaaagaatattttgggccatcatggtattcctcttcttagtcctactaacaattctcctcatatgggcaatcc |
25247761 |
T |
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| Q |
106 |
taagaccaacaaaacctactttcatcctcttagatgtaaccctatatgctttcaacgcatcacaaccaaatttcttaacctccaacttccaagtaacact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
25247760 |
taagaccaacaaaacctactttcatcctcttagatgtaaccctatatgctttcaacgcatcacaaccaaatttcttaacctcaaactttcaagtaacact |
25247661 |
T |
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| Q |
206 |
ttcgtctcgaaatcccaacgataacatcggtgtatactac |
245 |
Q |
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| T |
25247660 |
ttcgtctcgaaatcccaacgataacatcggtgtatactac |
25247621 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 43077022 - 43076853
Alignment:
| Q |
60 |
ttcctcttcatagtcctactaacaattctcctcatatgggcaatcctaagaccaacaaaacctactttcatcctcttagatgtaaccctatatgctttca |
159 |
Q |
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||||||||||| |||||| ||||||| || |||| ||||| || ||| ||| | |||||| ||||||| ||| |||||| || | || ||||||| |
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| T |
43077022 |
ttcctcttcattgtcctagtaacaatcctaatcatttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttca |
43076923 |
T |
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| Q |
160 |
acgcatcacaaccaaatttcttaacctccaacttccaagtaacactttcgtctcgaaatcccaacgataa |
229 |
Q |
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|||| || ||||||||||||||||| || |||||||| ||| |||| || || |||||||||||||| |
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| T |
43076922 |
acgccacagttccaaatttcttaacctcaaatttccaagtcacagtttcttcacgtaatcccaacgataa |
43076853 |
T |
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