View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_low_36 (Length: 244)

Name: NF17072_low_36
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_low_36
NF17072_low_36
[»] chr3 (2 HSPs)
chr3 (16-234)||(40147488-40147706)
chr3 (41-232)||(8102258-8102449)
[»] chr4 (5 HSPs)
chr4 (90-230)||(7656264-7656404)
chr4 (82-226)||(7636908-7637052)
chr4 (88-224)||(7606086-7606222)
chr4 (86-230)||(7615098-7615242)
chr4 (82-186)||(7628532-7628636)
[»] chr7 (3 HSPs)
chr7 (82-230)||(8913716-8913864)
chr7 (104-215)||(8941878-8941989)
chr7 (86-191)||(8936258-8936363)
[»] chr6 (2 HSPs)
chr6 (82-232)||(6500343-6500493)
chr6 (118-171)||(11968807-11968860)
[»] chr8 (1 HSPs)
chr8 (97-198)||(15196319-15196420)
[»] scaffold0190 (1 HSPs)
scaffold0190 (82-171)||(4300-4389)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 40147706 - 40147488
Alignment:
Q  16 catcaacatagcatgaaatagcgtggtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttccca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147706 catcaacatagcatgaaatagcgtggtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttccca 40147607  T
Q  116 ttgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147606 ttgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccact 40147507  T
Q  216 gcaaactgccacaggttct 234  Q
    || ||||||||||||||||    
T  40147506 gcgaactgccacaggttct 40147488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 8102258 - 8102449
Alignment:
Q  41 gtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaag 140  Q
    |||||||||  ||||||||||  |||||| |||  ||||| || ||||  | ||||||  || | |||||||||||||||||||||||||||||||||||    
T  8102258 gtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagttcatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaag 8102357  T
Q  141 acacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcaaactgccacaggtt 232  Q
    ||| ||||||| |||||| |||||||||||| ||||||||||||||| || || |||||||  |||||||||||||| ||||||||| ||||    
T  8102358 acatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccactggtt 8102449  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 7656404 - 7656264
Alignment:
Q  90 atccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagta 189  Q
    ||||||||| ||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||||| ||||||||||  ||  |    
T  7656404 atccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaa 7656305  T
Q  190 atcattccacttattttatttccactgcaaactgccacagg 230  Q
    | ||||||| || ||||||||||||| | ||||||||||||    
T  7656304 accattccatttgttttatttccactacgaactgccacagg 7656264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 7636908 - 7637052
Alignment:
Q  82 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 181  Q
    ||||||||||||||||| |   |||||||||||||| ||||||||||||   |||||||||| ||||||| ||| || |||||||||||| |||| ||||    
T  7636908 gacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaa 7637007  T
Q  182 atacagtaatcattccacttattttatttccactgcaaactgcca 226  Q
    |||| ||||| | |||| ||||||||| |||||| | ||||||||    
T  7637008 ataccgtaataagtccatttattttatatccactacgaactgcca 7637052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 7606086 - 7606222
Alignment:
Q  88 acatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacag 187  Q
    ||||||||||| |   ||||| |||||||||||||||||| ||||| ||||||||| ||||||| ||| || |||||||||||| ||||||||||||||     
T  7606086 acatccatgaaatgtgggtcacttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacat 7606185  T
Q  188 taatcattccacttattttatttccactgcaaactgc 224  Q
    | |  |||||| ||||||||| |||||| | ||||||    
T  7606186 ttacaattccatttattttatatccactacgaactgc 7606222  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 7615098 - 7615242
Alignment:
Q  86 caacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatac 185  Q
    ||||||||||||| | | |||||||||||||||||||||||||||  || | |||||| |||||||  || || |||||||||||| |||||||||| ||    
T  7615098 caacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaac 7615197  T
Q  186 agtaatcattccacttattttatttccactgcaaactgccacagg 230  Q
     ||||| | |||| ||  ||||| |||||| | ||||||||||||    
T  7615198 cgtaataagtccatttcctttatatccactacgaactgccacagg 7615242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 7628532 - 7628636
Alignment:
Q  82 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 181  Q
    |||||||||||||  || | | ||||||||||||||||||||||||||| || ||||||||| | ||||| ||| || |||||||||||| |||||||||    
T  7628532 gacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaa 7628631  T
Q  182 ataca 186  Q
    |||||    
T  7628632 ataca 7628636  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 8913864 - 8913716
Alignment:
Q  82 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 181  Q
    ||||||||||||||||| |   |||||||||||||| ||||||||||||   |||||||||| ||||||| ||| ||  ||||||||||| ||||  |||    
T  8913864 gacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaa 8913765  T
Q  182 atacagtaatcattccacttattttatttccactgcaaactgccacagg 230  Q
    |||| ||||| | |||| ||||||||| |||||| | ||||||||||||    
T  8913764 atactgtaataagtccatttattttatatccactacgaactgccacagg 8913716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 8941989 - 8941878
Alignment:
Q  104 ggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttat 203  Q
    ||||| |||||||||||||||||| || || ||||||||| ||||||| ||| || |||||||||||| |||||||||||||| | |  |||||| ||||    
T  8941989 ggtcacttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttat 8941890  T
Q  204 tttatttccact 215  Q
    ||||| ||||||    
T  8941889 tttatatccact 8941878  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 8936363 - 8936258
Alignment:
Q  86 caacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatac 185  Q
    ||||||||||||| | | |||||||||||||||||||||||||||  |  |||||||| ||||||| ||| || |||||||||||| |||| ||||||||    
T  8936363 caacatccatgaattgagggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatac 8936264  T
Q  186 agtaat 191  Q
     |||||    
T  8936263 tgtaat 8936258  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 6500343 - 6500493
Alignment:
Q  82 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 181  Q
    |||||| |||||||||| | | ||||||  | |||||| |||||| |||||| ||||||||| ||||||| ||| || ||||||| ||||||||||||||    
T  6500343 gacacagcatccatgaaattagggtcataactcattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaa 6500442  T
Q  182 atacagtaatcattccacttattttatttccactgcaaactgccacaggtt 232  Q
    ||||| ||| ||| |||  |||||||||| |||||| || |||||| ||||    
T  6500443 atacactaaccataccatctattttatttacactgcgaaatgccacgggtt 6500493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 11968807 - 11968860
Alignment:
Q  118 gcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttct 171  Q
    |||||||||||||||| |||||||||||||| |||||| || ||||||||||||    
T  11968807 gcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttct 11968860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 15196420 - 15196319
Alignment:
Q  97 aagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattc 196  Q
    |||||| |||||||||||||  |||||||||||||||  ||||||||||||| ||||||||| || ||||||||||| |||||||| ||| ||||| |||    
T  15196420 aagtcagggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaacacactaatctttc 15196321  T
Q  197 ca 198  Q
    ||    
T  15196320 ca 15196319  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 4300 - 4389
Alignment:
Q  82 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttct 171  Q
    |||||||||||||| || ||| | |||||||  |||||||||||||| |    ||||||||| |||| || |||||||||||| ||||||    
T  4300 gacacaacatccataaactcaggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttct 4389  T

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