View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_38 (Length: 231)
Name: NF17072_low_38
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25247609 - 25247390
Alignment:
| Q |
1 |
tacttacatgacctaccggagccaacagattacttaccggaccgccataccgccttcttaccaaggacacaatgagtatgacgtttggtctccgtttgtt |
100 |
Q |
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| T |
25247609 |
tacttacatgacctaccggagccaacagattactctccggaccgccataccgccttcttaccaaggtcacaatgagtatgacgtttggtctccgtttgtt |
25247510 |
T |
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| Q |
101 |
tacggcaatgatatacctgttgctccttttaactctgtgagcctttcacaagacgaaaataacggtaatatctttgttaccgttagagttgacggtagag |
200 |
Q |
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| T |
25247509 |
tacggcaatgatatacctgttgctccttttaactctgtgagcctttcacaagacgaaaataacggtaatatctttgttaccgttagagttgacggtagag |
25247410 |
T |
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| Q |
201 |
ttcgttttaaggttggtgct |
220 |
Q |
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| T |
25247409 |
ttcgttttaaggttggtgct |
25247390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 43076812 - 43076721
Alignment:
| Q |
14 |
taccggagccaacagattacttaccggaccgccataccgccttcttaccaaggacacaatgagtatgacgtttggtctccgtttgtttacgg |
105 |
Q |
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| T |
43076812 |
taccggagccaacaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttacgg |
43076721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 43087039 - 43086948
Alignment:
| Q |
14 |
taccggagccaacagattacttaccggaccgccataccgccttcttaccaaggacacaatgagtatgacgtttggtctccgtttgtttacgg |
105 |
Q |
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| T |
43087039 |
taccggagccaacaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttacgg |
43086948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 43090710 - 43090619
Alignment:
| Q |
14 |
taccggagccaacagattacttaccggaccgccataccgccttcttaccaaggacacaatgagtatgacgtttggtctccgtttgtttacgg |
105 |
Q |
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|||||||||||||| ||||||||| | ||||||||||| || || || || |||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
43090710 |
taccggagccaacaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttacgg |
43090619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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