View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_low_39 (Length: 230)

Name: NF17072_low_39
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_low_39
NF17072_low_39
[»] chr5 (5 HSPs)
chr5 (88-197)||(27246200-27246311)
chr5 (88-205)||(11245359-11245478)
chr5 (88-205)||(22868011-22868130)
chr5 (99-175)||(17535781-17535857)
chr5 (122-213)||(6967337-6967430)
[»] chr7 (15 HSPs)
chr7 (88-217)||(40230851-40230981)
chr7 (88-205)||(33540100-33540219)
chr7 (88-213)||(38190272-38190399)
chr7 (89-205)||(44767328-44767446)
chr7 (88-202)||(19468330-19468445)
chr7 (89-205)||(27224290-27224406)
chr7 (90-178)||(39608142-39608230)
chr7 (99-171)||(14802681-14802753)
chr7 (99-171)||(15249674-15249746)
chr7 (88-213)||(22317687-22317814)
chr7 (183-217)||(22317817-22317851)
chr7 (183-217)||(27224417-27224451)
chr7 (183-217)||(19468459-19468493)
chr7 (183-217)||(44767457-44767491)
chr7 (183-216)||(38190402-38190435)
[»] chr6 (10 HSPs)
chr6 (88-213)||(7201072-7201199)
chr6 (88-205)||(26497858-26497978)
chr6 (88-178)||(1112500-1112590)
chr6 (88-187)||(28847772-28847871)
chr6 (88-213)||(609623-609750)
chr6 (90-178)||(1522606-1522696)
chr6 (88-205)||(10669939-10670058)
chr6 (102-171)||(17364249-17364317)
chr6 (88-175)||(29288423-29288510)
chr6 (183-217)||(28847903-28847937)
[»] chr1 (12 HSPs)
chr1 (88-187)||(50509781-50509880)
chr1 (88-178)||(26687698-26687788)
chr1 (88-205)||(5882533-5882652)
chr1 (88-170)||(9672504-9672586)
chr1 (88-178)||(24892015-24892105)
chr1 (88-178)||(7380379-7380469)
chr1 (88-176)||(23688387-23688475)
chr1 (102-171)||(29864689-29864758)
chr1 (99-216)||(27564987-27565103)
chr1 (128-216)||(50262439-50262529)
chr1 (183-217)||(5882663-5882697)
chr1 (183-217)||(9672355-9672389)
[»] chr2 (7 HSPs)
chr2 (88-213)||(44259829-44259956)
chr2 (88-181)||(26290419-26290512)
chr2 (88-213)||(2104051-2104178)
chr2 (88-170)||(30707048-30707130)
chr2 (88-178)||(5868986-5869076)
chr2 (88-178)||(18242151-18242241)
chr2 (182-217)||(2104015-2104050)
[»] chr8 (12 HSPs)
chr8 (88-178)||(13751447-13751537)
chr8 (88-181)||(9946715-9946808)
chr8 (88-176)||(24534901-24534989)
chr8 (88-187)||(44004323-44004422)
chr8 (103-187)||(6976584-6976668)
chr8 (88-213)||(21466892-21467019)
chr8 (88-205)||(33474581-33474700)
chr8 (91-165)||(1738683-1738757)
chr8 (113-178)||(45231609-45231674)
chr8 (183-217)||(9946642-9946676)
chr8 (183-217)||(44004459-44004493)
chr8 (185-217)||(24534825-24534857)
[»] chr4 (9 HSPs)
chr4 (88-177)||(6131956-6132045)
chr4 (92-178)||(6087057-6087143)
chr4 (88-178)||(38138763-38138853)
chr4 (88-170)||(6166387-6166469)
chr4 (88-177)||(32727979-32728068)
chr4 (88-178)||(16061457-16061548)
chr4 (88-165)||(18886184-18886261)
chr4 (102-172)||(36441106-36441175)
chr4 (183-217)||(16061589-16061623)
[»] chr3 (3 HSPs)
chr3 (88-187)||(54561096-54561195)
chr3 (88-178)||(42624760-42624850)
chr3 (102-143)||(7741895-7741935)
[»] scaffold0005 (1 HSPs)
scaffold0005 (106-187)||(284293-284373)
[»] scaffold0125 (1 HSPs)
scaffold0125 (103-169)||(5793-5859)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 27246311 - 27246200
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||| |||||    
T  27246311 aaagattaattttctatttaaattgaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattacttttactaaagatgtgttttt 27246212  T
Q  188 --acttagaaat 197  Q
      ||||||||||    
T  27246211 taacttagaaat 27246200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 11245478 - 11245359
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||||| ||||||||||||||| |||||    
T  11245478 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccactgaaatcaaaattagcaattacttttactaaagatgtgttttt 11245379  T
Q  188 --acttagaaattgaaacat 205  Q
      |||||||||| |||||||    
T  11245378 aaacttagaaatagaaacat 11245359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 22868130 - 22868011
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtatttt- 186  Q
    |||||||||| ||  |||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||| || ||||     
T  22868130 aaagattaatcttccatttaaattgaaaaaaacactcgtataatgattattagccactgaaatcataattagcaattatttttactaaagacgtgtttta 22868031  T
Q  187 -tacttagaaattgaaacat 205  Q
      |||||||||| |||||||    
T  22868030 aaacttagaaatagaaacat 22868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 17535781 - 17535857
Alignment:
Q  99 ttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaa 175  Q
    ||||||||||||||||| |||||  |||||||||| ||||||||| |||||||| ||||| || |||||||||||||    
T  17535781 ttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattagcagttatttttactaa 17535857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 6967337 - 6967430
Alignment:
Q  122 ctcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtatttttacttagaaattgaaacataaaacatg 213  Q
    ||||||||||||||||||||||  ||||| | ||||| |||||| ||||||||| ||  ||  |||| ||||| |||| ||||||| |||||||    
T  6967337 ctcgtataatgattattagccactgaaattaaaattagcaattacttttactaaggacgtgctttttaacttataaatagaaacatgaaacatg 6967430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 40230981 - 40230851
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||  ||| |||    
T  40230981 aaagattaatcttctatttaaattgagaataacactcgtataatgattattagccaccgaaatcaaaattaacaattatttttac-aaagacgtgttttt 40230883  T
Q  186 ttacttagaaattgaaacataaaacatgttta 217  Q
    | ||||||||||| |||||| |||||||||||    
T  40230882 taacttagaaattaaaacatgaaacatgttta 40230851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 33540100 - 33540219
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| |||| |||  ||||||| ||||| |||||||||||||||||||  ||| |||    
T  33540100 aaagattaatcttctatttaaattgaaaataacactcgtataatgatgattaaccactgaaatcaaaattagcaattatttttactaaagacctgttttt 33540199  T
Q  186 ttacttagaaattgaaacat 205  Q
    | ||||||||||||||||||    
T  33540200 taacttagaaattgaaacat 33540219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 38190272 - 38190399
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |||||| |||||  ||||||||||||||||||  ||| |||    
T  38190272 aaagattaatattctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagaaattatttttactaaagacgtgttttt 38190371  T
Q  186 ttacttagaaattgaaacataaaacatg 213  Q
    | ||||||||||  |||||| |||||||    
T  38190372 taacttagaaataaaaacatgaaacatg 38190399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 44767328 - 44767446
Alignment:
Q  89 aagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaa--agatgtatttt 186  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||  | |||||||| ||||| ||||||||||||||||  | |||| ||||    
T  44767328 aagattaatcttctatttaaattgaaaataacactcgtataatgattattagttaccgaaatcaaaattagcaattatttttactaaatacatgtttttt 44767427  T
Q  187 tacttagaaattgaaacat 205  Q
     |||||||||| |||||||    
T  44767428 aacttagaaatagaaacat 44767446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 19468330 - 19468445
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttact--aaagatgtattt 185  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||   ||||| ||||||||||||||  ||| ||||||||    
T  19468330 aaagattaatcttttatttaaattgaaaataacattcgtataatgattattagcc-accaaatataaattagcaattatttttactaaaaatatgtattt 19468428  T
Q  186 ttacttagaaattgaaa 202  Q
    | |||||||||| ||||    
T  19468429 taacttagaaatagaaa 19468445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 27224290 - 27224406
Alignment:
Q  89 aagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaag--atgtatttt 186  Q
    ||||||||| || ||||||||  ||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||| |||  |||| ||||    
T  27224290 aagattaatcttctatttaaa--gaaaataacactcgtataatgattattagtcaccgaaatcaaaattagcaattatttttactgaagacatgtttttt 27224387  T
Q  187 tacttagaaattgaaacat 205  Q
     |||||||||| |||||||    
T  27224388 aacttagaaatagaaacat 27224406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 39608230 - 39608142
Alignment:
Q  90 agattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||| || |||||||||||||||||||||| |||||||  |||||||||| |||||| | ||||| |||||||||||||||||||    
T  39608230 agattaatcttctatttaaattgaaaataacactggtataattgttattagccaccgaaattaaaattaacaattatttttactaaaga 39608142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 14802753 - 14802681
Alignment:
Q  99 ttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattattttta 171  Q
    ||||||||||||||||| |||||  |||||||||| ||||||||| |||||||| ||||| ||||||||||||    
T  14802753 ttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattattttta 14802681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 15249746 - 15249674
Alignment:
Q  99 ttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattattttta 171  Q
    ||||||||||||||||| |||||  |||||||||| ||||||||| |||||||| ||||| ||||||||||||    
T  15249746 ttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattattttta 15249674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 22317687 - 22317814
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    ||||||| || || |||||||||||||||||  ||||||||||| |||||||| ||  ||||||| |||||  |||||||||||||| |||  ||| |||    
T  22317687 aaagattcatcttctatttaaattgaaaatactactcgtataattattattagtcactgaaatcaaaattagaaattatttttactacagacgtgttttt 22317786  T
Q  186 ttacttagaaattgaaacataaaacatg 213  Q
    | ||||| |||| ||||||| |||||||    
T  22317787 taacttataaatagaaacatgaaacatg 22317814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 22317817 - 22317851
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    |||||||||||||||||||||||||||||||||||    
T  22317817 tttttacttagaaattgaaacataaaacatgttta 22317851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 27224417 - 27224451
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    |||||||||||||||||||||||||||||||||||    
T  27224417 tttttacttagaaattgaaacataaaacatgttta 27224451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 19468459 - 19468493
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  19468459 tttttacttagaaattgaaacatgaaacatgttta 19468493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 44767457 - 44767491
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  44767457 tttttacttagaaattgaaacatgaaacatgttta 44767491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 38190402 - 38190435
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttt 216  Q
    ||||||||||||||||||||||| ||||||||||    
T  38190402 tttttacttagaaattgaaacatgaaacatgttt 38190435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 7201199 - 7201072
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    |||||||||| || |||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||| |||||||||||||||||||  ||| |||    
T  7201199 aaagattaatcttctatttaaattgaaaataacacttgtataatgattattagccactgaaatcaaaattagcaattatttttactaaagacgtgttttt 7201100  T
Q  186 ttacttagaaattgaaacataaaacatg 213  Q
    | |||||||||| ||||||| |||||||    
T  7201099 taacttagaaatagaaacatgaaacatg 7201072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 26497858 - 26497978
Alignment:
Q  88 aaagattaattttttatttaaattgaaaa-taacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtatt 184  Q
    |||||||||| || ||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||  ||| ||    
T  26497858 aaagattaatcttctatttaaattgaaaaataacacacgtataatgattattagccaccgaaatcaaaattagcaattatttttactaaagacgtgtttt 26497957  T
Q  185 tttacttagaaattgaaacat 205  Q
    || |||||||||| |||||||    
T  26497958 ttaacttagaaatagaaacat 26497978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 1112500 - 1112590
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || |||||||||||||||||||| |||||||||| |||||||||| |||||| | ||||| |||||||||||||||||||    
T  1112500 aaagattaatcttctatttaaattgaaaataacattcgtataatggttattagccaccgaaattaaaattagcaattatttttactaaaga 1112590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 28847772 - 28847871
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    ||||||||||  | |||||||||| ||||||||||  |||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||| |||||    
T  28847772 aaagattaatcctctatttaaattaaaaataacacatgtataatgattattagccactgaaatcaaaattaacaattatttttactaaagatgtgttttt 28847871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 609623 - 609750
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    |||| ||||| || |||||| |||||||||||||||||||||||||||||||||||   || ||| ||||| |||||| ||||||| ||||  ||| |||    
T  609623 aaaggttaatcttctatttatattgaaaataacactcgtataatgattattagccatgaaagtcaaaattagcaattagttttactgaagaggtgttttt 609722  T
Q  186 ttacttagaaattgaaacataaaacatg 213  Q
    | |||| ||||| ||||||| |||||||    
T  609723 taacttggaaatagaaacatgaaacatg 609750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 1522696 - 1522606
Alignment:
Q  90 agattaattttttatttaaattgaaaataacactcgtata--atgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||| || ||||||||||||||||||||||||||||  ||| |||||||||| |||||| | ||||| | |||||||||| ||||||    
T  1522696 agattaatcttctatttaaattgaaaataacactcgtataatatggttattagccaccgaaattaaaattagctattatttttattaaaga 1522606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 10670058 - 10669939
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    ||||| |||| || |||||||||| |||||||||  ||||||||||||||||| ||  ||||||| |||||  ||||| |||||||||| |||| |||||    
T  10670058 aaagaataatcttctatttaaattaaaaataacatccgtataatgattattagtcactgaaatcaaaattagtaattagttttactaaaaatgtgttttt 10669959  T
Q  188 --acttagaaattgaaacat 205  Q
      | |||||||| |||||||    
T  10669958 taatttagaaatagaaacat 10669939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 17364317 - 17364249
Alignment:
Q  102 tatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattattttta 171  Q
    ||||||||||||||| ||||  |||||||||||||||||||| || ||||| ||||| ||||||||||||    
T  17364317 tatttaaattgaaaagaacagccgtataatgattattagccaccg-aatcaaaattagcaattattttta 17364249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 29288423 - 29288510
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaa 175  Q
    |||||| ||| || ||||||||||||||| ||||  |||||||| ||||||||| | |||||| | |||||  | |||||||||||||    
T  29288423 aaagatcaatcttctatttaaattgaaaagaacatccgtataataattattagcaaccgaaattaaaattaatatttatttttactaa 29288510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 28847903 - 28847937
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  28847903 tttttacttagaaattgaaacatgaaacatgttta 28847937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 50509880 - 50509781
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||| || |||||    
T  50509880 aaagattaattttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaaagacgtgttttt 50509781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 26687698 - 26687788
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||||||||    
T  26687698 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattaaccaccgaaattaaaattaacaattatttttactaaaga 26687788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 5882533 - 5882652
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    |||||||||| || |||| |||||||||||||| |||||||||| ||||||| ||| |||||||| |||||  ||||||||||||||||||  ||| |||    
T  5882533 aaagattaatcttctattaaaattgaaaataacgctcgtataataattattaaccaccgaaatcaaaattaataattatttttactaaagacgtgttttt 5882632  T
Q  186 ttacttagaaattgaaacat 205  Q
    | ||||||||||||||||||    
T  5882633 taacttagaaattgaaacat 5882652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 9672586 - 9672504
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattattttt 170  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  9672586 aaagattaatcttctatttaaatttaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattattttt 9672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 24892015 - 24892105
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || ||||||||||||||||||||||||||||||| |||||||||| | ||| || ||||| |||||||||||||||||||    
T  24892015 aaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaaccaaaattaacaattatttttactaaaga 24892105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 7380379 - 7380469
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || ||||||||||||||||||||||| ||| ||| ||||||| || |||||| | ||||| |||||||||||||||||||    
T  7380379 aaagattaatcttctatttaaattgaaaataacactcatattatggttattagtcaccgaaattaaaattagcaattatttttactaaaga 7380469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 23688387 - 23688475
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaa 176  Q
    ||||| |||| || |||||||||||||||||||||||||||||| |||||| | ||   |||||| ||||| |||||||||||||||||    
T  23688387 aaagaataatcttctatttaaattgaaaataacactcgtataataattatttgtcactaaaatcaaaattaacaattatttttactaaa 23688475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 29864689 - 29864758
Alignment:
Q  102 tatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattattttta 171  Q
    ||||||||||||||||||||   ||||||||||||||||||| | |||| | ||||| ||||||||||||    
T  29864689 tatttaaattgaaaataacatcagtataatgattattagccaccaaaattaaaattagcaattattttta 29864758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 27565103 - 27564987
Alignment:
Q  99 ttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaa--agatgtatttttacttagaaa 196  Q
    ||||||||||||||||||||||| | ||||||||||||||| |||   |||| | ||||| ||||| ||||||||||  | |||| |||||||||| |||    
T  27565103 ttttatttaaattgaaaataaca-tggtataatgattattaaccactaaaattaaaattaacaatt-tttttactaaggacatgt-tttttacttaaaaa 27565007  T
Q  197 ttgaaacataaaacatgttt 216  Q
    | |||||||| |||||||||    
T  27565006 tagaaacatagaacatgttt 27564987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 50262529 - 50262439
Alignment:
Q  128 taatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtatttttacttagaaattgaaacataaaacatgttt 216  Q
    |||||||||||| ||| |  ||||| ||||| |||||||||||  ||| ||  ||| ||||||||||||||| ||||||| ||||||||||    
T  50262529 taatgattattaaccaccataatcaaaattagcaattattttttttaaggacgtgtttttttacttagaaatagaaacatgaaacatgttt 50262439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 5882663 - 5882697
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  5882663 tttttacttagaaattgaaacatgaaacatgttta 5882697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 9672389 - 9672355
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  9672389 tttttacttagaaattgaaacatgaaacatgttta 9672355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 44259829 - 44259956
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    |||||||||| || || ||||||||||||| ||||||||||||| |||||||||||  ||||||| ||||| ||||||||||||||||||| || |||||    
T  44259829 aaagattaatcttctagttaaattgaaaattacactcgtataattattattagccactgaaatcaaaattagcaattatttttactaaagacgtgttttt 44259928  T
Q  188 --acttagaaattgaaacataaaacatg 213  Q
      |||||||||| |||||||||||||||    
T  44259929 aaacttagaaatagaaacataaaacatg 44259956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 26290512 - 26290419
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgt 181  Q
    |||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||| ||||||||||||||||||||||    
T  26290512 aaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccatcgaaattaaaattagcaattatttttactaaagatgt 26290419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 2104178 - 2104051
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    |||||||||| || |||||||||||||||||||||| || |||||||||||||||| | |||||| ||||| ||||||||||||| ||||| ||||||||    
T  2104178 aaagattaatcttctatttaaattgaaaataacactagtctaatgattattagccaccaaaatcaaaattagcaattatttttacgaaagacgtattttt 2104079  T
Q  188 --acttagaaattgaaacataaaacatg 213  Q
      ||||||||||  |||||| |||||||    
T  2104078 taacttagaaatataaacatgaaacatg 2104051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 30707130 - 30707048
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattattttt 170  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||    
T  30707130 aaagattaattttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattattttt 30707048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 5868986 - 5869076
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || ||||||||||||||||||||||||||||||| |||||||||| | |||| | |||||  ||||||||||||||||||    
T  5868986 aaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaattaaaattagaaattatttttactaaaga 5869076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 18242151 - 18242241
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || ||||||||| ||||||||||||||||||||| |||||| ||| | |||| | ||||| |||||||||||||||||||    
T  18242151 aaagattaatcttctatttaaatcgaaaataacactcgtataatggttattaaccaccaaaattaaaattagcaattatttttactaaaga 18242241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 2104050 - 2104015
Alignment:
Q  182 atttttacttagaaattgaaacataaaacatgttta 217  Q
    |||||||||||||||||||||||| |||||||||||    
T  2104050 atttttacttagaaattgaaacatgaaacatgttta 2104015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 13751447 - 13751537
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||    
T  13751447 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccatcgaaattaaaattagcaattatttttactaaaga 13751537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 9946808 - 9946715
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgt 181  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||||||||||||||||||||||    
T  9946808 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattaaccaccaaaatcaaaattaccaattatttttactaaagatgt 9946715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 24534989 - 24534901
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaa 176  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||    
T  24534989 aaagattaattttctgtttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaaa 24534901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 44004323 - 44004422
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||| || |||||    
T  44004323 aaagataaatcttctatttaaattgaaaataacactcgtataatgattattagccatcaaaatcaaaattaacaattatttttactaaagacgtgttttt 44004422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 6976584 - 6976668
Alignment:
Q  103 atttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||| | ||||| ||||||||||||||||||| ||||||||    
T  6976584 atttaaattgaaaataacattcgtataatgattattagccaccaaaattaaaattagcaattatttttactaaagacgtattttt 6976668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 21466892 - 21467019
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga--tgtattt 185  Q
    |||||||||| || | |||| |||||||||||||||| ||||||||||||||||||   |||||| ||||| |||||| ||||||||||||  ||| |||    
T  21466892 aaagattaatcttctgtttatattgaaaataacactcttataatgattattagccatgaaaatcaaaattagcaattagttttactaaagaggtgttttt 21466991  T
Q  186 ttacttagaaattgaaacataaaacatg 213  Q
    | |||| ||||| ||||||| |||||||    
T  21466992 taacttggaaatagaaacatgaaacatg 21467019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 33474700 - 33474581
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    |||||||||| ||  ||||||||| ||||||||| || |||||||||||| ||| |  ||||||| ||||| ||||||||||||||||||| || |||||    
T  33474700 aaagattaatcttcaatttaaattaaaaataacattcatataatgattatcagctactgaaatcaaaattagcaattatttttactaaagacgtgttttt 33474601  T
Q  188 --acttagaaattgaaacat 205  Q
      |||||||||| |||||||    
T  33474600 aaacttagaaatagaaacat 33474581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 1738757 - 1738683
Alignment:
Q  91 gattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaatta 165  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||| ||||| |||||| | ||||| ||||||    
T  1738757 gattaatcttttatttaaattggaaataacacttgtataatgattatgagccaccgaaattaaaattaccaatta 1738683  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 45231674 - 45231609
Alignment:
Q  113 aaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||| ||||||||||||||| |||||||||| | |||| | ||||| |||||||||||||||||||    
T  45231674 aaaaaaacactcgtataatggttattagccaccaaaattaaaattagcaattatttttactaaaga 45231609  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 9946676 - 9946642
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  9946676 tttttacttagaaattgaaacatgaaacatgttta 9946642  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 44004459 - 44004493
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  44004459 tttttacttagaaattgaaacatgaaacatgttta 44004493  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 24534857 - 24534825
Alignment:
Q  185 tttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||| |||||||||||    
T  24534857 tttacttagaaattgaaacatgaaacatgttta 24534825  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 6132045 - 6131956
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaag 177  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| | |||||  |||||||||||||||||    
T  6132045 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaattaaaattagtaattatttttactaaag 6131956  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 6087057 - 6087143
Alignment:
Q  92 attaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||| |||||||||||||||||||    
T  6087057 attaatcttatatttaaattgaaaataacactcgtataatggttattagccaccgaaattaaaattagcaattatttttactaaaga 6087143  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 38138853 - 38138763
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  | |||||| ||| | |||||||||||||||||||    
T  38138853 aaagattaatattttatttaaattgaaaataacactcgtataatgattattaacccccaaaatcaaaatcaacaattatttttactaaaga 38138763  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 6166469 - 6166387
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattattttt 170  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||    
T  6166469 aaagattaatcttctatttaaatttaaaataacactcgtataatgattattagccaccgaaatcaaaattaaaaattattttt 6166387  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 32727979 - 32728068
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaag 177  Q
    |||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| | |||| | ||||| ||||||||||||||||||    
T  32727979 aaagattaatcttctatttaaattgaaaataacactcctataatggttattagccaccaaaattaaaattaacaattatttttactaaag 32728068  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 16061457 - 16061548
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaatta-tttttactaaaga 178  Q
    |||||| ||| || |||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||| |||||| |||||||||||||    
T  16061457 aaagatcaatcttctatttaaattgaaaataacacttgtataatggttattagccaccgaaatcaaaattagcaattattttttactaaaga 16061548  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 18886261 - 18886184
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaatta 165  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||| ||||||    
T  18886261 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattatccaccgaaattaaaattagcaatta 18886184  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 36441106 - 36441175
Alignment:
Q  102 tatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttac 172  Q
    |||||||| ||||||||||||||||||||| | |||||||||  ||||||| ||||| |||||||||||||    
T  36441106 tatttaaactgaaaataacactcgtataatta-tattagccactgaaatcaaaattagcaattatttttac 36441175  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 16061589 - 16061623
Alignment:
Q  183 tttttacttagaaattgaaacataaaacatgttta 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  16061589 tttttacttagaaattgaaacatgaaacatgttta 16061623  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 54561195 - 54561096
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||||||| | | |||||| ||||| |||||| |||||||||||| || |||||    
T  54561195 aaagattaatcttctatttaaattgaaaataacactcatataatgattattagctaccaaaatcaaaattagcaattagttttactaaagacgtgttttt 54561096  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 42624850 - 42624760
Alignment:
Q  88 aaagattaattttttatttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaaga 178  Q
    |||||||||| || |||||||||||| | |||||||||||||||| |||||||||| |||||| | ||||| |||||||||||| ||||||    
T  42624850 aaagattaatcttctatttaaattgatattaacactcgtataatggttattagccaccgaaattaaaattagcaattatttttattaaaga 42624760  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 7741895 - 7741935
Alignment:
Q  102 tatttaaattgaaaataacactcgtataatgattattagcca 143  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  7741895 tatttaaattgaaaataaca-tcgtataataattattagcca 7741935  T

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Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 284293 - 284373
Alignment:
Q  106 taaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttttactaaagatgtattttt 187  Q
    |||||| ||||||||||||| ||||||||||||| ||| |||||| | ||||| |||||| ||||| ||||||||| |||||    
T  284293 taaattaaaaataacactcgcataatgattattaaccaccgaaattaaaattagcaatta-ttttattaaagatgtgttttt 284373  T

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Target: scaffold0125 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 5793 - 5859
Alignment:
Q  103 atttaaattgaaaataacactcgtataatgattattagccaacgaaatcagaattatcaattatttt 169  Q
    ||||||||| |||| ||||  | |||||||||||||||||| |||||||| ||||| ||||||||||    
T  5793 atttaaattaaaaacaacatccatataatgattattagccaccgaaatcaaaattagcaattatttt 5859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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