View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17072_low_4 (Length: 591)
Name: NF17072_low_4
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 578
Target Start/End: Complemental strand, 12885707 - 12885146
Alignment:
| Q |
20 |
gttggcactaggaaaaggtggaatcatagtgaatgttggaagaggagctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattgga |
119 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12885707 |
gttggcattgggaaaaggaggaatcatagtgaatgttggaagaggtgctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattgga |
12885608 |
T |
|
| Q |
120 |
ggtgctggtttggatgtgtttgagaatgaacctcatgttcctaaagaattctattcattgaataatgttgtcctttcacctcatgcagctgttgtaactt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12885607 |
ggtgctggtttggatgtgtttgagaatgaacctcatgttcctaaagacttcttttcattggataatgttgtcctttcacctcatgcagctgttgtaactt |
12885508 |
T |
|
| Q |
220 |
ctgagtctttgatgggtatctgccaacttgtggaacaaaatttgacagcattcttttcaaataaacctctgattgctccagttatatagttgattg---- |
315 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||| |
|
|
| T |
12885507 |
ctgagtctttgatgggtatccgccaaattgtggaacaaaatttgacagcattcttttcaaataaagctccgattactccggttatatagttgattggatg |
12885408 |
T |
|
| Q |
316 |
---aatgtgtatttggaaatctcaaattcagcgttaacattcatcatgtgtttccttcatcccaccgcgttaccaagtagactggctatgaattgttttt |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
12885407 |
cgttatgtgtatttggaaatctcaaattcagtgttatcattcgccgtgtgtttccttcatcccaccgcgttaccaagtaga----ctatgaaatgttttt |
12885312 |
T |
|
| Q |
413 |
cacgttttgtttattcctttgttgaatcctttcgaacatgtttgttcttatggtgtttttaggtcaagtttgtaatgatcgatatgcgctactagtttga |
512 |
Q |
| |
|
||| |||| ||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12885311 |
cacattttttttgttcctatgttgcatccttttgaacatgtttgttcttatggtgtttttaggtcaagtttgtaatgatcgatatgcgctactagtttga |
12885212 |
T |
|
| Q |
513 |
gagatcagctattaagaatgttaagctcagagtttattaagtatcaaattttagttatttttatat |
578 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12885211 |
gagatcggctatgaagaatgttaagttcagagtttattaagtatcaaattttagttatttttatat |
12885146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 12897345 - 12897055
Alignment:
| Q |
20 |
gttggcactaggaaaaggtggaatcatagtgaatgttggaagaggagctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattgga |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
12897345 |
gttggcactaggaaaaggcggaatcatagtgaatgttggaagaggtgctctcattgatgaaaaggaattgttgaagtgtttgattgaagaagagattgga |
12897246 |
T |
|
| Q |
120 |
ggtgctggtttggatgtgtttgagaatgaacctcatgttcctaaagaattctattcattgaataatgttgtcctttcacctcatgcagctgttgtaactt |
219 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
12897245 |
ggtgctggtttggatgtgtttgaaaatgaacctcatgttcctaaagacttctattcattggataatgttgtcctttcacctcattcagctgtcttaactt |
12897146 |
T |
|
| Q |
220 |
ctgagtctttgatgggtatctgccaacttgtggaacaaaatttgacagcattcttttcaaataaacctctgattgctccagttatatagtt |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
12897145 |
tagagtcacatatgggtatctgccaacttgtggaacaaaatttgatagcattcttttcaaataagcctctgattactccagttatatagtt |
12897055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 12881322 - 12881215
Alignment:
| Q |
51 |
aatgttggaagaggagctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattggaggtgctggtttggatgtgtttgagaatgaac |
150 |
Q |
| |
|
|||||||||||||| | ||| |||||||| || ||||| | ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12881322 |
aatgttggaagaggtggtcttattgatgagaaacaattgatcaagtgtttgatggaaggagaaattgctggtgctggtttggatgtgtttgagaatgaac |
12881223 |
T |
|
| Q |
151 |
ctcatgtt |
158 |
Q |
| |
|
|||||||| |
|
|
| T |
12881222 |
ctcatgtt |
12881215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 28453783 - 28453896
Alignment:
| Q |
45 |
atagtgaatgttggaagaggagctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattggaggtgctggtttggatgtgtttgaga |
144 |
Q |
| |
|
||||| |||||||||||| | |||| |||||||| ||| ||| |||| |||||||| |||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
28453783 |
atagtcaatgttggaagatggtctctaattgatga---ggagttggtgaattgtttgatagaaggacatattggtggtgctggtttggatgtgtttgaga |
28453879 |
T |
|
| Q |
145 |
atgaacctcatgttcct |
161 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
28453880 |
atgagcctaatgttcct |
28453896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University