View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17072_low_44 (Length: 211)
Name: NF17072_low_44
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2451329 - 2451449
Alignment:
| Q |
1 |
gtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaaggtccctttcaccttctgtgggagtcttgtgtttgatcgattatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2451329 |
gtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaaggtccctttcaccttctgtgggagtcttgtgtttgatcgattatc |
2451428 |
T |
|
| Q |
101 |
cttaatctgatcatgggtgtg |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2451429 |
cttaatctgatcatgggtgtg |
2451449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23730003 - 23730041
Alignment:
| Q |
1 |
gtatgaagtgaaaattggaaaacaagaacaaattttcaa |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23730003 |
gtatgaagtgaaaattggaaaacaagaacaaattttcaa |
23730041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University