View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_5 (Length: 505)
Name: NF17072_low_5
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 7432482 - 7432049
Alignment:
| Q |
1 |
aaggatcaataatttggaacaagaagcaaatctaataaaaatattagctatgaaaaaagattacatatgttacaattagttgaaaataaaccaccaacca |
100 |
Q |
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| T |
7432482 |
aaggttcaataatttggaacaagaagcaaatctaataaaaagattaactatgaaaaaagattacatatgttacacttagttgaaaataaaccaccaatca |
7432383 |
T |
|
| Q |
101 |
attaaggtcaaacgaagtctaaatagtcgaatgattgtattagaacaccaacgaacgatagaaaaataaaataaaagaatatcgcaagacacatagacac |
200 |
Q |
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| T |
7432382 |
attaaggtcaaatgaagtctaaatagtcgaatgattgtattagaacaccaacaaacgataaaaaaataaaataaaagaatatcgcaagacacatagacac |
7432283 |
T |
|
| Q |
201 |
atactttgttcatgtagtttgacaaa---taatgcacacttttgcgactatagaacaactaaatctctaa-----tatttctttagatgaaatatggtta |
292 |
Q |
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| T |
7432282 |
atact---ttcatgtagtttgacaaatagtaatgtacacttttgcgactataaaacaactaaatctctaatactgtatttcttttgatgaaatagggcta |
7432186 |
T |
|
| Q |
293 |
caatgttacgattagtatacgcaatactacaatccatattacaaacaatactcttgagctccttcttttgatgaattaagatttacaatgttcgcaatga |
392 |
Q |
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| T |
7432185 |
cagtgttacgattagtatacgcaatactacaatccagattacaaacaatactcttgagctccttcttttcatgaattaagatttacaatgttcgcaatga |
7432086 |
T |
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| Q |
393 |
tacattgacttagctcactctctgcgttttgcctatc |
429 |
Q |
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| T |
7432085 |
tacattgacttagctcactctctgcgtcttgcctatc |
7432049 |
T |
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