View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_6 (Length: 494)
Name: NF17072_low_6
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 110 - 476
Target Start/End: Original strand, 5919819 - 5920179
Alignment:
| Q |
110 |
aaatgtcaaattatgaggatttgttacgcaataagaatagtgcagctatgagtccagcttta---cgtgcattgtatgtggaacttgtgattttacaatc |
206 |
Q |
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| T |
5919819 |
aaatgtcaaattatgaggatttgttccgcaataagaatagtgcagctatgagtccagctttattacatgcattgtatgtggcacttgtgattttacaatc |
5919918 |
T |
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| Q |
207 |
aaatagccaacattacaataactttataaatcaattattcattcactttttctatgtggctgtgatgtgcctaaaataataggtatgtggctatatgagt |
306 |
Q |
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| T |
5919919 |
aaatagccaacattacaataactttataaatcaattattcattcactttttctatgtggctgtgatgtgcctaaaataataggtatgtggctataggagt |
5920018 |
T |
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| Q |
307 |
agtaatatgaggtgatgaattaaagctacgttgtgagcttgtggctagaaatagttttggtttctcgaatctccagtaggaccaggacacacactaacca |
406 |
Q |
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| T |
5920019 |
agtaatatgag-----gaattaaagctacgttgtgagcttgtggctagaaatagttttggtttaacgaatctccagtaggaccaggacacacactaacca |
5920113 |
T |
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| Q |
407 |
cgtaattcctttaggaatagtttggtatcaaattctattacgttaaggcactt-aaggcttttcgtggaag |
476 |
Q |
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| T |
5920114 |
cgtaattcctttag--ata---tggtatcaaattctattacgttaaggcacttgaaagcttttcgtggaag |
5920179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 5919747 - 5919831
Alignment:
| Q |
4 |
attatacttgatagtgattaatcaatggaaaataatacttattaatctagtgggaattttgttaactcaaacaaatgtcaaatta |
88 |
Q |
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| T |
5919747 |
attatacttgatagtgattaatcaatggaaaataatacttattaatcttgtgggaattttgttaagtcaaacaaatgtcaaatta |
5919831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 5901908 - 5901824
Alignment:
| Q |
164 |
cagctttacgtgcattgtatgtggaacttgtgattttacaatcaaatagccaacatt---acaataactttataaatcaattatt |
245 |
Q |
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| T |
5901908 |
cagctttacatgcatcgtatgtggcacttatgattttacaatcaaatagccaacattacaacaataactttataaatcaattatt |
5901824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 5913321 - 5913358
Alignment:
| Q |
221 |
acaataactttataaatcaattattcattcactttttc |
258 |
Q |
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| T |
5913321 |
acaataactttataaatcaattatttatgcactttttc |
5913358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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