View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_low_8 (Length: 473)

Name: NF17072_low_8
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_low_8
NF17072_low_8
[»] chr3 (11 HSPs)
chr3 (1-457)||(46995426-46995882)
chr3 (1-429)||(46997714-46998130)
chr3 (1-457)||(46980612-46981054)
chr3 (2-457)||(46974623-46975066)
chr3 (219-429)||(47001377-47001588)
chr3 (1-232)||(47001603-47001822)
chr3 (12-146)||(46951480-46951614)
chr3 (210-429)||(46951212-46951431)
chr3 (3-126)||(46955837-46955960)
chr3 (12-146)||(46958673-46958807)
chr3 (297-417)||(46958405-46958525)


Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 46995882 - 46995426
Alignment:
Q  1 accatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995882 accatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatgg 46995783  T
Q  101 aactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995782 aactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctatt 46995683  T
Q  201 cacaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995682 cacaatagatggtttcctgaaggctatggtccaattatcaaccttcctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagag 46995583  T
Q  301 agagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatc 400  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995582 agagaatcttccatttttcagcagagtttatagcaaaactcaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatc 46995483  T
Q  401 tgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaac 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995482 tgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaac 46995426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 46998130 - 46997714
Alignment:
Q  1 accatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||| ||||||||||||||||| ||   | ||||||||||    
T  46998130 accatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatgg 46998031  T
Q  101 aactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctatt 200  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||||            |||||||||| |||||||||| ||||||||  ||||||||    
T  46998030 aactggttattggaatttctttaactcattttctgagatatttcaaaa------------tgatgttcatgttcctgttccgatttcacataaacctatt 46997943  T
Q  201 cacaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagag 300  Q
    ||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  46997942 cacaatagatggtttccagaaggttatggtccaatcatcagccttcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagag 46997843  T
Q  301 agagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatc 400  Q
    ||||||| || |||||||||||||||||||| || |||||||||||||| || ||||||||||  || ||||  ||||||||||| |||||||| |||||    
T  46997842 agagaatatttcatttttcagcagagtctattgcgaaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttcttttcaatccttatc 46997743  T
Q  401 tgcactagtttggagatctataactcgtg 429  Q
     |||||||||||||||||| |||| ||||    
T  46997742 agcactagtttggagatctctaacgcgtg 46997714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 46981054 - 46980612
Alignment:
Q  1 accatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatgg 100  Q
    |||||||||| || ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||| ||   | || |||||||    
T  46981054 accatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtctttgtgatgg 46980955  T
Q  101 aactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctatt 200  Q
    ||| ||||||||||||||||| || ||| |||||||||||||||||||            |||||||| |  | ||  ||| |||||||| ||||||||     
T  46980954 aacagcttattggaatttcttcaacacattttctgagatatttcaaaa------------tgatgttcctgctgct--tcccatttcacatcaacctatc 46980869  T
Q  201 cacaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagag 300  Q
    ||||| |||||||||||  |||| |||||||||||||||||||| || |||||||||||| | |||||| |||| ||||||||| |||| ||||| ||||    
T  46980868 cacaagagatggtttccacaaggttatggtccaattatcaaccttccattcaaacatcaccatgagtttgttcacagatatgaaacacccattttaagag 46980769  T
Q  301 agagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatc 400  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||||   |||||   | ||||  ||||| ||||||||||||||||||||    
T  46980768 agagaatcttccatttttcagtggaatctatagcaaaacttaaagcaaaggcaaatgcagagtctaatacaaacaaaatttcttcgtttcaatctttatc 46980669  T
Q  401 tgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaac 457  Q
     ||| ||||||||||||||||||||| ||  |||| |||||| || | |||||||||    
T  46980668 agcattagtttggagatctataactcatgcacgtcaactacaacacggtcagagaac 46980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 2 - 457
Target Start/End: Complemental strand, 46975066 - 46974623
Alignment:
Q  2 ccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatgga 101  Q
    ||||||||| || ||||||||||| ||  | |||||||| ||||||||||| || |||||||| ||||||||||||||||| ||   | | ||||||||     
T  46975066 ccatgatggtcataccatgtctttattaactattcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattgtataggtgatggg 46974967  T
Q  102 actgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctattc 201  Q
    |||| ||||||||||||||||||  || |||||||||||||||||||            |||| ||||| ||| |||||| |||||||| |||||||| |    
T  46974966 actggttattggaatttctttaactcattttctgagatatttcaaaa------------tgatattcatgttcttgttccgatttcacatcaacctatcc 46974879  T
Q  202 acaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagaga 301  Q
    ||||||||||||||||  |||| |||||||| ||||||||||| || |||||||||||||| |||||| |||| ||||||||| || | ||||| |||||    
T  46974878 acaatagatggtttccacaaggttatggtccgattatcaaccttccattcaaacatcacgaggagtttgttcacagatatgaaacatccattttaagaga 46974779  T
Q  302 gagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatct 401  Q
    ||||||||||||||||||||| |||||||||   ||||| ||||||||||||||  ||||||   | ||||  ||||| ||||||||||||||||||||     
T  46974778 gagaatcttccatttttcagctgagtctataatgaaactgaaagcaaaggcaaatgaagagtctaatacaagaaaaatttcttcgtttcaatctttatca 46974679  T
Q  402 gcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaac 457  Q
    ||| ||||||||||||||||||||||||  |||| |||||| || | |||||||||    
T  46974678 gcattagtttggagatctataactcgtgcacgtcaactacaacacggtcagagaac 46974623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 219 - 429
Target Start/End: Complemental strand, 47001588 - 47001377
Alignment:
Q  219 gaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagagagagaatcttccattttt 318  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| || ||||||||||    
T  47001588 gaaggttatggtccaactatcaaccttcctttcaaacatcacgacgagtttattcacagatatcaagcacctactttgagagagaggatattccattttt 47001489  T
Q  319 cagcagagtctatagcaaaacttaaa-gcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatctgcactagtttggagat 417  Q
    |||||||||||||||| ||||||||| ||||| || ||||||||||  || ||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  47001488 cagcagagtctatagcgaaacttaaaggcaaaagctaacaaagagtttgatacaaacaaaatctcttcgtttcaatctttatcagcactagtttggagat 47001389  T
Q  418 ctataactcgtg 429  Q
    ||||||||||||    
T  47001388 ctataactcgtg 47001377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 47001822 - 47001603
Alignment:
Q  1 accatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatgg 100  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||   | ||||||||||    
T  47001822 accatgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattggtgatgg 47001723  T
Q  101 aactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctatt 200  Q
    ||| ||||||||||||||||| || ||| |||| ||||||||||||||            |||||||||| |||||||||| ||||||||  ||||||||    
T  47001722 aacagcttattggaatttcttcaacacattttcggagatatttcaaaa------------tgatgttcatgttcctgttccgatttcacataaacctatt 47001635  T
Q  201 cacaatagatggtttcctgaaggctatggtcc 232  Q
    ||||| ||||||||||| ||||| ||||||||    
T  47001634 cacaaaagatggtttccagaaggttatggtcc 47001603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 46951614 - 46951480
Alignment:
Q  12 cacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatggaactgcttatt 111  Q
    ||||||||| | ||||| ||||| |||||||||||  || |||| |||||||||||||||||||| ||||| |||  | |||||||||||||| ||||||    
T  46951614 cacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttatt 46951515  T
Q  112 ggaatttctttaatacactttctgagatatttcaa 146  Q
    |||||||||||||||||   ||||| |||||||||    
T  46951514 ggaatttctttaatacatggtctgaaatatttcaa 46951480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 429
Target Start/End: Complemental strand, 46951431 - 46951212
Alignment:
Q  210 tggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagagagagaatct 309  Q
    |||||||| ||||| ||||||||| | ||||| || || ||||||||||| |||||| ||||   ||| |||||| |||| |   ||||||||||| |||    
T  46951431 tggtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattataactaggtatgaaccacccaagctgagagagagattct 46951332  T
Q  310 tccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatctgcactagt 409  Q
    |||||||| ||||||||||||| |||||  | ||||| ||||| || |  ||||   | ||||  ||||||||||| || ||||||||||| ||||  ||    
T  46951331 tccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctttatcagcacatgt 46951232  T
Q  410 ttggagatctataactcgtg 429  Q
    |||||||  |||||||||||    
T  46951231 ttggagaggtataactcgtg 46951212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 46955960 - 46955837
Alignment:
Q  3 catgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatggaa 102  Q
    |||||||| ||||||||| | ||| | |||||||||||||| ||||||   || |||||||||||||||||||||||||||||   | |||||||||| |    
T  46955960 catgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatggga 46955861  T
Q  103 ctgcttattggaatttctttaata 126  Q
    || ||| |||||||||||| ||||    
T  46955860 cttctttttggaatttcttcaata 46955837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 46958807 - 46958673
Alignment:
Q  12 cacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatggaactgcttatt 111  Q
    ||||||||| | ||||| || ||||||||||| ||  || | || ||||||||||||||||||||| |||| ||   | |||||||||| ||  |||  |    
T  46958807 cacaccatgccattgttatcaattcaagtcacagagctagtggatggtgttttcataggttgttccctgaatcattgtattggtgatggtacctctttct 46958708  T
Q  112 ggaatttctttaatacactttctgagatatttcaa 146  Q
    ||||||| ||||||| |   |||||||||||||||    
T  46958707 ggaatttttttaatatatggtctgagatatttcaa 46958673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 417
Target Start/End: Complemental strand, 46958525 - 46958405
Alignment:
Q  297 agagagagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctt 396  Q
    ||||| ||| ||||||||||| || | |||||||| | |||||| ||||||||||| || || ||||   | ||||| ||||| |||||||| ||  |||    
T  46958525 agagatagattcttccattttacaccggagtctattgtaaaactgaaagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctt 46958426  T
Q  397 tatctgcactagtttggagat 417  Q
    |||| ||||  ||||||||||    
T  46958425 tatcagcacatgtttggagat 46958405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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