View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_9 (Length: 453)
Name: NF17072_low_9
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 49686387 - 49686042
Alignment:
| Q |
10 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatccta |
109 |
Q |
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| T |
49686387 |
atcatcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatccta |
49686288 |
T |
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| Q |
110 |
ttctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactaca |
209 |
Q |
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| T |
49686287 |
ttctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactaca |
49686188 |
T |
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| Q |
210 |
caagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaactcactttttgctaaattctctgatactg |
309 |
Q |
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| T |
49686187 |
caagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaacccaatttttgctaaattctctgatactg |
49686088 |
T |
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| Q |
310 |
attctctagaaaagtaaaacatgtactccttatgtcgcaccataat |
355 |
Q |
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| T |
49686087 |
attctctagaaaagtaaaacatgtactccttatgttgcaccataat |
49686042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 49690647 - 49690421
Alignment:
| Q |
10 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaag---------atgtagtgcatgaactaga |
100 |
Q |
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| T |
49690647 |
atcaccactgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaa |
49690548 |
T |
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| Q |
101 |
gccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaa |
200 |
Q |
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| T |
49690547 |
gccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgacttggaaa |
49690451 |
T |
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| Q |
201 |
at---tactacacaagtcatgtgaatttgt |
227 |
Q |
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| T |
49690450 |
atgagtaccacacaagtcttgtaaatttgt |
49690421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 49685982 - 49685908
Alignment:
| Q |
359 |
ataatatatccttctaagcaagtcttatgagtctgcgtctataattaaaacccacttccggctaagttttccact |
433 |
Q |
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| T |
49685982 |
ataatatatccttctaagcaagtcttatgagtctgcgtctataattgaaacccacttccggctaagttttccact |
49685908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 49679020 - 49678948
Alignment:
| Q |
10 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaaga |
82 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
49679020 |
atcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaga |
49678948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 49690378 - 49690319
Alignment:
| Q |
257 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgatactgattctct |
316 |
Q |
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| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgctaataattctct |
49690319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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