View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17073_high_4 (Length: 470)
Name: NF17073_high_4
Description: NF17073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17073_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 111 - 461
Target Start/End: Complemental strand, 53279272 - 53278931
Alignment:
| Q |
111 |
gaaatcggtaagtcatacatgtaattaagttgtttatataaaactaaccaaaaggaaactagaagaactggtgtatatattttcgaagaagaggatttaa |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53279272 |
gaaatcggtaagtcctacatgtaattaagttgtttatataaaactaaccaaaaggaaactagaagaactggtgtatatattttcgaagaagaggatttaa |
53279173 |
T |
|
| Q |
211 |
gagcttgctgtaaacactctccgagggatgaaaactgtcccagaaaacgtagtccctaacatcttcacattgggtagcaaattggttgcataacactgct |
310 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53279172 |
gagcttgctgtaaacactctctgagggatgaaaactgtcccagaaaacgtagtccctaacatcttcacattgggtagcaaattggttgcataacactgct |
53279073 |
T |
|
| Q |
311 |
acctctactgctcctgtgccacaacatcctttgtcaacgactttataacctgccattataaaaccaaaactaatttatatgtacaatttttcagatcaat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53279072 |
acctctactgctcctgtgccacaacatcctttgtcaacgactttataacctgccattataaaaccaaaactaatttata---------tttcagatcaat |
53278982 |
T |
|
| Q |
411 |
tttatacctaatgaaaacaaatagtttctcaacaaactttgcaagaataat |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53278981 |
tttatacctaatgaaaacaaatagtttctcaacaaactttccaagaataat |
53278931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 53279382 - 53279312
Alignment:
| Q |
40 |
aaatcgatgtagatgatgtccccttaaaacacaaaataatttatttaatgtacctcatcaaccatacactt |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53279382 |
aaatcgatgtagatgatatccccttaaaacacaaaataatttatttaatgtacctcatcaaccatacactt |
53279312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 428 - 461
Target Start/End: Original strand, 11835687 - 11835720
Alignment:
| Q |
428 |
caaatagtttctcaacaaactttgcaagaataat |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11835687 |
caaatagtttctcaacaaactttgcaagaataat |
11835720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University