View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17073_high_9 (Length: 229)
Name: NF17073_high_9
Description: NF17073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17073_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 43339593 - 43339408
Alignment:
| Q |
17 |
ttctttctactagtttttaatgtgtaaatagatctagtgtttcactttttagtgcaagagtttaataccatgtttttccattattaattactacatgcca |
116 |
Q |
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| T |
43339593 |
ttctttcttctagtttttaatgtgtaaatagatctagtgtttcactttttagtgcaagagtttaataccatgtttt-ccattattaattactacatgcca |
43339495 |
T |
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| Q |
117 |
tttataacatgcaaatcctcatccacacacaaaatatattggcaaatattttagccatgatatctctttgtaccatgtactagtagc |
203 |
Q |
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| T |
43339494 |
tttataacatgcaaatcctcatccacacacaaaatatattggcaaatattttagccatgatatctctttgtaccatgtactagtagc |
43339408 |
T |
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