View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17073_low_7 (Length: 286)
Name: NF17073_low_7
Description: NF17073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17073_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 8504971 - 8505232
Alignment:
| Q |
12 |
atgaagaaggccaaaccgtcggcaacattgctactataaggagcagttatagcaaaagtgaagagtgtttcgaagttagccacgtctcctgttttgctat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8504971 |
atgaagaaggccaaaccgtcggcaacattgctactataaggagcagttatggcaaaagtgaagagtgtttcgaagttagccacgtctcctgttttgctat |
8505070 |
T |
|
| Q |
112 |
cccaaatatgaataggagcagaatatagagctctgccaatagagttcttgactgccttggtaagttgtaacttccctgtcgaggtagttatggcattgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8505071 |
cccaaatatgaataggagcagaatatagagctctgccaatagagttcttgactgccttggtaagttgtaacttccctgtcgaggtagttatggcattgcc |
8505170 |
T |
|
| Q |
212 |
ttggaagattagattcttttggtcttggctaaactttgtgatggtaaaagaagtgagttctg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8505171 |
ttggaagattagattcttttggtcttggctaaactttgtgatggtaaaagaagtgagttctg |
8505232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 25370864 - 25370699
Alignment:
| Q |
102 |
gttttgctatcccaaatatg--aataggagcagaatatagagctctgccaatagagttcttgactgccttggtaagttgtaacttccctgtcgaggtagt |
199 |
Q |
| |
|
||||||||||||||||| || |||||| || ||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||| |||| ||| |
|
|
| T |
25370864 |
gttttgctatcccaaatgtgtgaataggggcggaataaagagctctaccaatagagttcttgactgccttggagagttctaacttccctgttgaggcagt |
25370765 |
T |
|
| Q |
200 |
tatggcattgccttggaagattagattcttttggtcttggctaaactttgtgatggtaaaagaagt |
265 |
Q |
| |
|
| | |||| |||||||||||| ||||||||||| ||| || ||| |||||||||| ||| ||||| |
|
|
| T |
25370764 |
tttcgcatcgccttggaagatgagattcttttgatctgggacaaattttgtgatggaaaaggaagt |
25370699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University