View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17073_low_9 (Length: 240)
Name: NF17073_low_9
Description: NF17073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17073_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 3587437 - 3587275
Alignment:
| Q |
21 |
tattggtgtagttagtataacttagtttcaaaaagagttggtttgaattaatcaggtaatgtggttgattgtggaagaggtaagggcaatgtaggtattt |
120 |
Q |
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| T |
3587437 |
tattggtgtagttagtataacttagtttcaaagagagttggtttgaattaatcaggtaatgtggctgattgtggaagaggtcagggcaatgtaggtattt |
3587338 |
T |
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| Q |
121 |
gcctagacaaaagggatgcagacaaatctgcaacacctaaataaactataaaaaagcaaaggta |
184 |
Q |
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| T |
3587337 |
gcctagac-aaaggggtgcagacaaatctgcaacacctaaataaactataaaaaagcaaaggta |
3587275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 7111193 - 7111119
Alignment:
| Q |
22 |
attggtgtagttagtataacttagtttcaaaaagagttggtttgaattaatcaggtaatgtggttgattgtggaa |
96 |
Q |
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| T |
7111193 |
attggtgtagttagtataacttagtttcaacaagagttagtttgaattaatggggtaatgtgaccgattgtggaa |
7111119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 9997368 - 9997441
Alignment:
| Q |
26 |
gtgtagttagtataacttagtttcaaaaagagttggtttgaattaatcaggtaatgtggttgattgtggaagag |
99 |
Q |
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| T |
9997368 |
gtgtagttagtataacttaatttcaacgagagttagtttgaataaatggggtaatgtggccgattgtgaaagag |
9997441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 9986203 - 9986280
Alignment:
| Q |
22 |
attggtgtagttagtataacttagtttcaaaaagagttggtttgaattaatcaggtaatgtggttgattgtggaagag |
99 |
Q |
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| T |
9986203 |
attgctgtagttagtataacttaatttcaacgagagttaatttgaattaatggggaaatgtagccgattgtggaagag |
9986280 |
T |
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