View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17074_high_4 (Length: 379)
Name: NF17074_high_4
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17074_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 379
Target Start/End: Complemental strand, 27568384 - 27568017
Alignment:
| Q |
12 |
atgaagtatcagaaagattttctggaacagctggtacataatttcttagagaatctcttgtttagattttgtttgttggctcaaactcaagttgttgcca |
111 |
Q |
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| T |
27568384 |
atgaagtatcagaaagattttctggaacagctggtacataatttcttagagaatctcttgtttagattttgtttgttggctcaaactcaagttgttgcca |
27568285 |
T |
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| Q |
112 |
tatttaggcaaaatagttttactcttgaaatgttgatggccttagattttgaaagctgaatcttgtggaaggaatcannnnnnnattagacaattagggt |
211 |
Q |
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| T |
27568284 |
tatttaggcaaaatagttttactcttgaaatgttgatggccttagattttgaaagctgaatcttgtggaaggaatcatttttttattagacaattagggt |
27568185 |
T |
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| Q |
212 |
caacttactattatgttacgggtcttaagagtttgaagaaaaggaaaaccgcgtcatacatgctgttgttatattttgaactttcgtcatttaaaaagat |
311 |
Q |
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| T |
27568184 |
caacttactattatgttacgggtcttaagagtttgaaggaaaggaaaaccgcgtcatacatgctgttgttatattttgaacttttttcatttaaaaagat |
27568085 |
T |
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| Q |
312 |
agagtataattgctttttatcgaatattgagtcctagtaattgatcaatttatgtactctttagtagg |
379 |
Q |
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| T |
27568084 |
agagtataattgctttttatcgaatattgagtcctagtaattgatcaatttatgtactctttagtagg |
27568017 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 45756606 - 45756566
Alignment:
| Q |
15 |
aagtatcagaaagattttctggaacagctggtacataattt |
55 |
Q |
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| T |
45756606 |
aagtctcaaaaagattttctggaacagctggtacatcattt |
45756566 |
T |
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