View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17074_high_5 (Length: 361)
Name: NF17074_high_5
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17074_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 45617915 - 45617573
Alignment:
| Q |
1 |
aacatttcttgtctagctgttttggaacataattttgttaattaagttgaacttacatttcttgcatggtttgttgacggggttattaaaattagtgatt |
100 |
Q |
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| T |
45617915 |
aacatttcttgtctagctgttttggaacataattttgttaattaagttgaacttacatttcttgcatggtttgttgacggggttattaaaattagtgatt |
45617816 |
T |
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| Q |
101 |
gttttataaaattgatcaattgctgttatatgtacttgtgcaaagggtttttgtctagcnnnnnnnn-aaacttgtatttcttttcataacttcatggat |
199 |
Q |
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| T |
45617815 |
gttttataaaattgatcaattgctgttatatgtacttgtgcaaagggtttttgtctagcttattttttaaatttgtatttcttttcataacttcatggat |
45617716 |
T |
|
| Q |
200 |
atagttatttcttcaatttcttaacgggttttatttaagaataaggaaggaaaaagaaggaaaatgataacagagaagaatgttgatattttatttaaga |
299 |
Q |
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| T |
45617715 |
atagttatttcttcaatttcttaacgggttttatttaagaataaggaaggaaaaagaaggaaaatgataacagagaagaatgttgatattttatttaaga |
45617616 |
T |
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| Q |
300 |
atgaggaagaaaaaagaaggaaagttttaatttcaaattaacc |
342 |
Q |
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| T |
45617615 |
atgaggaagaaaaaagaaggaaagttttaatttcaaattaacc |
45617573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17893139 - 17893208
Alignment:
| Q |
1 |
aacatttcttgtctagct---gttttggaacataattttgttaattaagttgaacttacatttcttgcat |
67 |
Q |
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| T |
17893139 |
aacatttcttgtctaactaccgttttgggacataattttgttaattaagttaaacttgcatttcatgcat |
17893208 |
T |
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