View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17074_high_6 (Length: 346)
Name: NF17074_high_6
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17074_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 40980251 - 40979965
Alignment:
| Q |
18 |
actcaattcaaagctaaacttgtataatttagccaaaatcatggcaacgagcaacatggaaaaagagaaatttcattattattattaaataaaatacttg |
117 |
Q |
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| T |
40980251 |
actcaattcaaagctaaacttgtataatttagccaaaatcatggcaacgagcaacatggaaaaagagaaatgtcattattattattaaataaaatacttg |
40980152 |
T |
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| Q |
118 |
gaagacaagacatacatgtttgctttgtcgtgtttcccaaataattaattgatattaacatatctaannnnnnnngcctagaatatgatacacctattaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
40980151 |
gaagacaagacatacatgtttgctttgtcgtgtttcccaaataattaattgatattaacatatctaa-tttttttgcctagaatatgatacacccattaa |
40980053 |
T |
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| Q |
218 |
ctactcgtcctttgtaaaagtatgcactataatcaaattgtcccctcatgtgatctttactccactttgtctacactctgatctatct |
305 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40980052 |
ctactcgtcctttgtgaaagcatgcactataatcaaattgtcccctcatgtgatcttcactccactttgtctacactctgatctatct |
40979965 |
T |
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