View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17074_high_8 (Length: 246)
Name: NF17074_high_8
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17074_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38878645 - 38878872
Alignment:
| Q |
1 |
aagcagcaaatccgttagcaagtaactcaacatcacgttaattaaaattattgaaacaaactttgtgaaactcaaagagaagatgattgacgagacaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38878645 |
aagcagcaaatccgttagcaagtaactcaacatcacgttaattaaaattattgaaacaaactttgtgaaactgaaagagaagatgattgacgagacaagt |
38878744 |
T |
|
| Q |
101 |
ctaaaaaactggagttagtttgcggttcggcgctcacagttatcgaaaaatgggattcaacgcagcggccaagtgtggagttataaatttgatatgagca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38878745 |
ctaaaaaactggagttagtttgcggttcggcgctcacagttatcgaaaaatgggattcaacgccgcggccgagtgtggagttataaatttgatatgagca |
38878844 |
T |
|
| Q |
201 |
tgtattttatttcatggtatagatagat |
228 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
38878845 |
tgtattttatttcacggtatagatagat |
38878872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University