View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17074_low_1 (Length: 574)
Name: NF17074_low_1
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17074_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 11 - 557
Target Start/End: Complemental strand, 4321364 - 4320819
Alignment:
| Q |
11 |
cacagactgtctcatttaaaacaagacttgtcatagtgaatagagaagaataaaagtcagaaggcatcgtcaaagtaccaagatgcttatagttgaacca |
110 |
Q |
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| T |
4321364 |
cacagattgtctcatttaaaacaagacttgtcatagtgaatagagaagaataaaagtcagaaggcatcgtcaaagtactaagatgcttatagttgaacca |
4321265 |
T |
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| Q |
111 |
gaatttaattttcttttctgaaccaatatttatataccaatcagatacggtgaagcttgactttaaaagttacatctcttatcacggacaatgttgattg |
210 |
Q |
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| T |
4321264 |
gaatttaattttcttttctgaatcaatatttatataccaatcagatacggtgaagcttgacgttaaaagttacatctcttatcacagacaatgttgattg |
4321165 |
T |
|
| Q |
211 |
ataatagaaagtttggagaagtttttgaggacatgtatgcttattatgttctctagattataatacggcagaaatttggtatcacaatcacaaaatgaca |
310 |
Q |
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| T |
4321164 |
ataatagaaagtttggagaagtttttgaggacatgtatacttattatgttctctagattataatacggcagaaatttggtatcacactcacaaaatgaca |
4321065 |
T |
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| Q |
311 |
aatgtatgactaagtaaggaggaagccaatacacaaaaagacaacaatactaaatccttatttgattattgaaaatcaaggtcaagaaagatcaaattga |
410 |
Q |
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| T |
4321064 |
aatgtatgactaagtaaggaggaagccaatacacaaaaagacaacaatactaaatccttatttgatgattcaaaatcaaggtcaagaaagatcaaattga |
4320965 |
T |
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| Q |
411 |
caaactccatcgtccctgatccgggcagcttggttttccggcaagtagatnnnnnnnnttaatttcaaaggtttttccatttccccctttcacaacagcc |
510 |
Q |
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| T |
4320964 |
caaactccatcgtccctgatccgggcagcttggtttgccggcaagtagataaaaaaaattaatctcaaaggtttttcattttccccctttcacaacagcc |
4320865 |
T |
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| Q |
511 |
ccatttctgagtttcgtataactaacaaaatttgaatccctacctct |
557 |
Q |
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| T |
4320864 |
ccatttctgagttttgtataactaacaaaa-ttgaatccctacctct |
4320819 |
T |
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