View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17074_low_10 (Length: 241)
Name: NF17074_low_10
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17074_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27567988 - 27567769
Alignment:
| Q |
1 |
ttaagttttctattttaatacagcaaatgacaatgataaaggctaaagctggagtgaagaataatctaagaagattgaacaagagcatcatccaaagtgg |
100 |
Q |
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| T |
27567988 |
ttaagttttctattttaatacagcaaatgacaatgataaaggctcaagctggagtgaagaataatctaagaagattgaacaagagcatcatccaaagtgg |
27567889 |
T |
|
| Q |
101 |
ttcgaaccatattgttcatgttatttgttttgctttaatttgtttctttgtagtttacttttggtctaaaatgtctagaaaatgagacttatgaatttaa |
200 |
Q |
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| T |
27567888 |
ttcgaaccatattgttcatgttatttgttttgctttaatttgtttctttgtagtttacttttggtctaaaatgtctagaaaatgagacttaagaatttaa |
27567789 |
T |
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| Q |
201 |
agacagctccctggttgtaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
27567788 |
agacagctccctggttgtaa |
27567769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 45755636 - 45755528
Alignment:
| Q |
13 |
ttttaatacagcaaatgacaatgataaaggctaaagctggagtgaagaataatctaagaagattgaacaagagcatcatccaaagtggttcgaaccatat |
112 |
Q |
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||||||| |||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||| ||| ||| | | || |||||| |||||||| |
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| T |
45755636 |
ttttaatgcagcaaatgacagtggcaaaggctcaagctggggtgaagaataatctaagaagattgaacaggagtatcgtgcgaaatggttcaaaccatat |
45755537 |
T |
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| Q |
113 |
tgttcatgt |
121 |
Q |
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| T |
45755536 |
tgttcatgt |
45755528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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