View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17074_low_3 (Length: 404)
Name: NF17074_low_3
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17074_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 42104210 - 42103836
Alignment:
| Q |
11 |
gcagagaagcaaaagccaaggcagtctcaggcacaagaaaattactcttatatacatgcaaacaacatagtttctttggaaaacatgtatgtgagtggaa |
110 |
Q |
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| T |
42104210 |
gcagagaagcaaaagccaaggcagtctcaggcacaagaaaattactcttatatacatgcaaacaacatagtttctttggaaaacatgtatgttagtggaa |
42104111 |
T |
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| Q |
111 |
ggccattgcactaccctcctatcatgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgtcaggaagggcagcatcagca |
210 |
Q |
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| T |
42104110 |
ggccattgcactaccctcctgacatgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgtcaggaagggcagcatcagca |
42104011 |
T |
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| Q |
211 |
tctgcagcctggcctagccgtgaacattgatccaattattaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatc |
310 |
Q |
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| T |
42104010 |
tctgcagtccggcctagccgtgaacattgatcca---attaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatc |
42103914 |
T |
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| Q |
311 |
acaggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaattactaac |
388 |
Q |
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| T |
42103913 |
actggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaatcactaac |
42103836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 134 - 378
Target Start/End: Complemental strand, 42113277 - 42113036
Alignment:
| Q |
134 |
atgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgtcaggaagggcagcatcagcatctgcagcctggcctagccgtga |
233 |
Q |
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| T |
42113277 |
atgcctcatgaagctgcttataatctgtacaattcagtcacaggatatggtcctagtcgggatgggcaacatcaacaactgcagcctggtcccgccgcaa |
42113178 |
T |
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| Q |
234 |
acattgatccaattattaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatcacaggaggagacataaattattt |
333 |
Q |
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||| ||| ||| |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||| ||||| | ||||||| ||| |||||| | |
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| T |
42113177 |
acagtgaacca---attaggcaaccagagaatgctgcaataactatgcctgcagcaaatgtgaatggtgatgaaattatcggaggaggcatgaattatat |
42113081 |
T |
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| Q |
334 |
cgctaaagacgcattccaaaacgagctggataggtttggatcacc |
378 |
Q |
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| T |
42113080 |
tgctaaagacacattcccaaacgagctggataggtttggatcacc |
42113036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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