View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17074_low_7 (Length: 340)

Name: NF17074_low_7
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17074_low_7
NF17074_low_7
[»] chr4 (6 HSPs)
chr4 (4-340)||(11796985-11797318)
chr4 (90-303)||(11778498-11778710)
chr4 (170-302)||(11701497-11701626)
chr4 (241-304)||(11695776-11695839)
chr4 (255-303)||(11675245-11675293)
chr4 (255-303)||(11683524-11683572)
[»] scaffold0294 (1 HSPs)
scaffold0294 (241-303)||(15852-15914)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 340
Target Start/End: Original strand, 11796985 - 11797318
Alignment:
Q  4 attattctcaagtaaagaaagggttcaacactcttgcacaaccacctttataataagaaggacagatcaataagcaagttgaattgggtgacttttgtgg 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||| |||||||||||||    
T  11796985 attattttcaagtaaagaaagggttcaacactcttgcacaaccacccttataataag---gacagatcaataagcaagttgaattgtgtgacttttgtgg 11797081  T
Q  104 ctcaagaagtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttggttcaatggaggaatacaatgaagttttggtagaagctc 203  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  11797082 ctcaagaagtaatgaatacataaacgcaaaaaaactcattttcattgaagaagaaaatttggttcaatggaggaatacaatgacgttttgttagaagctc 11797181  T
Q  204 aattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtac 303  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  11797182 aattaactgatcttgtagatggtgctgttgattatagagggcaacctgcaatcagatccaaatctggttattggcgatccgcttggtttatcataggtac 11797281  T
Q  304 tatttgagccatgtatcttgaatcctttgctagtctc 340  Q
    || ||||||||| ||||||||||||||||||||||||    
T  11797282 tacttgagccatttatcttgaatcctttgctagtctc 11797318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 90 - 303
Target Start/End: Original strand, 11778498 - 11778710
Alignment:
Q  90 ggtgacttttgtggctcaagaagtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttggttcaatggaggaatacaatgaagt 189  Q
    |||||||||| |||  |||||||||||||||||||||||||       |||||||| |||||||||||||||||||||| ||||| ||||||||||| ||    
T  11778498 ggtgacttttatggaccaagaagtaatgaatacataaacgcaaacaa-ctcattttgattgaagaagaaaatttggttcgatggaagaatacaatgatgt 11778596  T
Q  190 tttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctggttattggcgatccgcttgg 289  Q
    |||| |||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||||||    
T  11778597 tttgttagatgctaaattagctgatcttgtagatggtgctgttgattatagaggacaacctgccatcagatccaaatctggttattggctatccgcttgg 11778696  T
Q  290 tttatcataggtac 303  Q
    ||||||||||||||    
T  11778697 tttatcataggtac 11778710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 11701497 - 11701626
Alignment:
Q  170 atggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctg 269  Q
    ||||| |||| ||||||||| ||| |||||||||||||| ||   ||||| ||||| |||||||| || |  ||||| |||||  |||| |  |||||||    
T  11701497 atggaagaatccaatgaagtgttgttagaagctcaattatct---cttgttgatggcgctgttgactacaatggacagcctgcagttaggtttaaatctg 11701593  T
Q  270 gttattggcgatccgcttggtttatcataggta 302  Q
    |||||||| ||||||||||||||||||||||||    
T  11701594 gttattggagatccgcttggtttatcataggta 11701626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 11695776 - 11695839
Alignment:
Q  241 aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtact 304  Q
    ||||||||||||  ||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  11695776 aggacaacctgccgttagatccaaaactggctattggagatccgcttggtttatcataggtact 11695839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 11675245 - 11675293
Alignment:
Q  255 ttagatccaaatctggttattggcgatccgcttggtttatcataggtac 303  Q
    |||| |||||| ||||||||||| ||||||||||||||||||| |||||    
T  11675245 ttaggtccaaaactggttattggagatccgcttggtttatcattggtac 11675293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 11683524 - 11683572
Alignment:
Q  255 ttagatccaaatctggttattggcgatccgcttggtttatcataggtac 303  Q
    |||| |||||| ||||||||||| ||||||||||||||||||| |||||    
T  11683524 ttaggtccaaaactggttattggagatccgcttggtttatcattggtac 11683572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 15852 - 15914
Alignment:
Q  241 aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtac 303  Q
    ||||||||||||  |||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  15852 aggacaacctgccgttaggtccaaatctggttactggagatccgcttggtttatcataggtac 15914  T

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