View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17074_low_9 (Length: 244)

Name: NF17074_low_9
Description: NF17074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17074_low_9
NF17074_low_9
[»] chr3 (11 HSPs)
chr3 (10-237)||(2856031-2856258)
chr3 (10-237)||(2768759-2768986)
chr3 (10-237)||(2758904-2759131)
chr3 (10-237)||(2748688-2748915)
chr3 (10-237)||(2818247-2818474)
chr3 (21-237)||(5412597-5412813)
chr3 (10-237)||(2838824-2839048)
chr3 (19-237)||(2797051-2797269)
chr3 (10-127)||(2807070-2807187)
chr3 (19-237)||(2790048-2790275)
chr3 (185-237)||(2755734-2755786)
[»] scaffold0691 (1 HSPs)
scaffold0691 (14-233)||(6377-6596)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 2856031 - 2856258
Alignment:
Q  10 ccttgttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgac 109  Q
    ||||| || ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||     
T  2856031 ccttgctcgtgtgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgat 2856130  T
Q  110 ggggaatcaaagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgac 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  2856131 ggggaatcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattggccctatgtatcaaccgaaggtattcatcaatgac 2856230  T
Q  210 atcttcagtgcgaaatgatgcttctctc 237  Q
    ||||||| ||||||||||||||||||||    
T  2856231 atcttcaatgcgaaatgatgcttctctc 2856258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2768986 - 2768759
Alignment:
Q  10 ccttgttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgac 109  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||    
T  2768986 ccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaatgcaattttatgac 2768887  T
Q  110 ggggaatcaaagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgac 209  Q
    ||||| |||||||||||||| |||||| ||  |||  || ||||||||| ||||   || ||||||||| |||| |||||||||| ||||||||||||||    
T  2768886 ggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattggccctatgggtcaaccgaaggtattcatcaatgac 2768787  T
Q  210 atcttcagtgcgaaatgatgcttctctc 237  Q
    ||||||| ||||||||||||||||||||    
T  2768786 atcttcaatgcgaaatgatgcttctctc 2768759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2759131 - 2758904
Alignment:
Q  10 ccttgttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgac 109  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||| || ||| ||||| ||||||||||||||| |||| ||||    
T  2759131 ccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgac 2759032  T
Q  110 ggggaatcaaagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgac 209  Q
    |||||||||||||||||||| |||||||||  ||||||| || |||||| |  ||| |||||||||||  |||||||| |||||| ||||| ||||| |     
T  2759031 ggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattat 2758932  T
Q  210 atcttcagtgcgaaatgatgcttctctc 237  Q
    ||||||| ||||||| ||||||||||||    
T  2758931 atcttcaatgcgaaacgatgcttctctc 2758904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2748915 - 2748688
Alignment:
Q  10 ccttgttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgac 109  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| || |||||  | | |||||    
T  2748915 ccttgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgac 2748816  T
Q  110 ggggaatcaaagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgac 209  Q
    |||||||||||||||||||| | |||| ||  |||  |||||||||||| | || | |||||||||||| ||| || | |||||| ||||||||||||||    
T  2748815 ggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggaggattggccctatgcattagccgaaggtattcatcaatgac 2748716  T
Q  210 atcttcagtgcgaaatgatgcttctctc 237  Q
    ||||||| ||||||||||||||||||||    
T  2748715 atcttcaatgcgaaatgatgcttctctc 2748688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2818474 - 2818247
Alignment:
Q  10 ccttgttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgac 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| || ||    
T  2818474 ccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaatttcataac 2818375  T
Q  110 ggggaatcaaagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgac 209  Q
    ||||| ||||||| || |||   |||| ||  |||   || |||||||  | |||  ||| ||||| || |||||||||  |||| ||||||||||||||    
T  2818374 ggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcctatggatcaaaagaaggtattcatcaatgac 2818275  T
Q  210 atcttcagtgcgaaatgatgcttctctc 237  Q
    ||||||| ||||||||||||| ||||||    
T  2818274 atcttcaatgcgaaatgatgcatctctc 2818247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 5412813 - 5412597
Alignment:
Q  21 tgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgacggggaatcaaa 120  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||  | | |||| |||||||||||    
T  5412813 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaa 5412714  T
Q  121 gttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgacatcttcagtgc 220  Q
    ||||||||   ||||| ||  |||  |||||||||||  | |||| |||||||| ||| ||| || | |||| | ||||| ||||||||||||||| |||    
T  5412713 gttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattgaccctatgcattagccgatggtattcgtcaatgacatcttcaatgc 5412614  T
Q  221 gaaatgatgcttctctc 237  Q
    |||||||||||||||||    
T  5412613 gaaatgatgcttctctc 5412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 2838824 - 2839048
Alignment:
Q  10 ccttgttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgac 109  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||||||||| || ||| || ||| ||||| ||||||||||||||| |||| ||||    
T  2838824 ccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctgatgcaattttgtgac 2838923  T
Q  110 ggggaatcaaagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgac 209  Q
    ||||||||||||||||||||   ||||    | |  ||  ||||||||  | |||| |||||||||||| ||| || |  ||||| ||||||||||||||    
T  2838924 ggggaatcaaagttttgattaaccttg---gagtcatgcataaagatctgcatccaggaggattggccctatgcattagtcgaaggtattcatcaatgac 2839020  T
Q  210 atcttcagtgcgaaatgatgcttctctc 237  Q
    ||||||| ||||||||||||||||||||    
T  2839021 atcttcaatgcgaaatgatgcttctctc 2839048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 2797269 - 2797051
Alignment:
Q  19 tgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgacggggaatca 118  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| | |||||||| || |||||| |||||  | |  ||| ||| |||||    
T  2797269 tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatca 2797170  T
Q  119 aagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgacatcttcagt 218  Q
    | ||||||||| | |||| ||  |||  |||||||||||| | |||  |||||| ||||| ||| |||| | |||| ||||||||||||||||||||| |    
T  2797169 atgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatcagctgaaggtattcatcaatgacatcttcaat 2797070  T
Q  219 gcgaaatgatgcttctctc 237  Q
    |||||||||||||||||||    
T  2797069 gcgaaatgatgcttctctc 2797051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 2807187 - 2807070
Alignment:
Q  10 ccttgttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgac 109  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  |||| |||||||||  | ||||  |||||  | | |||||    
T  2807187 ccttgttcatgtgaaatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgac 2807088  T
Q  110 ggggaatcaaagttttga 127  Q
    ||||||||||||||||||    
T  2807087 ggggaatcaaagttttga 2807070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 2790275 - 2790048
Alignment:
Q  19 tgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgacggggaatca 118  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| | ||||||||  | |||||| |||||  | | |||| |||||||||    
T  2790275 tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatca 2790176  T
Q  119 aagttttgattcggcttgtaacattgttgactaaagatccacg---tccatgaggattg------gccccatggatcaaccgaagatattcatcaatgac 209  Q
    ||||||||||| |||||| ||  |||  || |||||||  |||   ||||  |||||||      |||| ||| || | |||||| |||||||| ||||     
T  2790175 aagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgat 2790076  T
Q  210 atcttcagtgcgaaatgatgcttctctc 237  Q
    ||||||| ||||||||||||||||||||    
T  2790075 atcttcaatgcgaaatgatgcttctctc 2790048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 2755786 - 2755734
Alignment:
Q  185 tcaaccgaagatattcatcaatgacatcttcagtgcgaaatgatgcttctctc 237  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2755786 tcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc 2755734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 6377 - 6596
Alignment:
Q  14 gttcatgtgaaatttggaagttatacctctcgcttctttccttgattccgcgaattgacaacttaatgtcctgaatctctgatgcagttttatgacgggg 113  Q
    |||||||| ||||||| ||||||||||| || ||||| ||||||||||| |||||||||| ||| |||||||||||||| |||||  | | |||  | |     
T  6377 gttcatgtaaaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgaga 6476  T
Q  114 aatcaaagttttgattcggcttgtaacattgttgactaaagatccacgtccatgaggattggccccatggatcaaccgaagatattcatcaatgacatct 213  Q
    |||||||||||||||| |||||  ||  |||  |||||| ||||| | |||| |||| ||||||| |||||||| |||||| ||||||||||| ||||||    
T  6477 aatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccctatggatcagccgaaggtattcatcaataacatct 6576  T
Q  214 tcagtgcgaaatgatgcttc 233  Q
    ||| ||||||||||||||||    
T  6577 tcaatgcgaaatgatgcttc 6596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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