View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17075_high_1 (Length: 669)
Name: NF17075_high_1
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17075_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 6 - 669
Target Start/End: Complemental strand, 47840603 - 47839938
Alignment:
| Q |
6 |
agcagcacagataaaccaagaccatggaaaacgaattatacgatccactagctccgaaatattagccacttttccatttaaaaggacatcatttttctcc |
105 |
Q |
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|||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47840603 |
agcaacacaaataaaccaagaccatggaaaatgaattatacgatccactagctccgaaatattagccacttttccatttaaaaggacatcatttttctcc |
47840504 |
T |
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| Q |
106 |
aaccatatgcaccacacgtccacaacgttgttacacaaattaaatgagaaactcttttacctctcttcccttttccgactgagttgaacaacaaggaatt |
205 |
Q |
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| T |
47840503 |
aaccatatgcaccacacgtccacaacgttgttacacaaattaaatgagaaactcttttacctctcttcccttttccgactgagttgaacaacaaggaatt |
47840404 |
T |
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| Q |
206 |
tttctatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatcaaattccgaatctccttggttttcggatacattacaaacaaatg |
305 |
Q |
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| T |
47840403 |
tttctatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatcaaattccgaatctccttggttttcggatacattacaaacaaatg |
47840304 |
T |
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| Q |
306 |
tccctctgtctcgatttcattaaagnnnnnnncacaactttgttgatgaatcttattgtcattttctcttgaagcaatcgccaaccaaaaacacaaattt |
405 |
Q |
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| T |
47840303 |
tccctctgtctcgatttcattaaagaaaaaaacacaactttgctgatgaatcttattgtcattttctcttgaagcaatcgccaaccaaaaacacaaattt |
47840204 |
T |
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| Q |
406 |
tttaaggtaccaatgttatcaatagttgtctcacagctgccaaaaagtcaccgtccgtgtcctcaactgtccggaaattagacaacagcatctagcagct |
505 |
Q |
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| T |
47840203 |
tttaaggtaccaatgttatcaatagttgtctcacagctgccaaaaagtcaccgtccatgtcctcaactgtccggaaattagacaacagcatctagcagct |
47840104 |
T |
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| Q |
506 |
tttcacagtaaaacacttcatcgattcaggtagccaaacaaaagaatctgcctcttcgacccacggacgaaccttccgtaccagacttctc--aaaacag |
603 |
Q |
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| T |
47840103 |
tttcacagtaaaacacttcatcgattcaggtagccaaacaaaagaatctgcctcttcgacccacggacgaaccttccgtaccagacttctcaaaaaacag |
47840004 |
T |
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| Q |
604 |
cagtttccacactgtcaaacgttattcaaaatgttgttcaagctccaagaaaatacacaaccacca |
669 |
Q |
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| T |
47840003 |
cagtttccacactgtcaaacgttattcaaaatgttgttcaagctccaagaaaatacacaactacca |
47839938 |
T |
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Back To:
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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 26322692 - 26322641
Alignment:
| Q |
210 |
tatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatc |
261 |
Q |
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| T |
26322692 |
tatcaactcttctccccaacctattgcattccacttcatccaattaaaaatc |
26322641 |
T |
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