View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17075_high_2 (Length: 520)
Name: NF17075_high_2
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17075_high_2 |
 | |
|
| [»] scaffold1064 (2 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 229 - 506
Target Start/End: Complemental strand, 9238624 - 9238345
Alignment:
| Q |
229 |
atgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctct-aacactgagaattgacaacaagtcagccataagcct |
327 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
9238624 |
atgtcaagctttgtggttggattcatcaatgaaagagattaagtgtgaagtgatgaagcctcttaacactgagaattgacaacaagtcagccataagtct |
9238525 |
T |
|
| Q |
328 |
tgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtat |
427 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9238524 |
tgtcaagaatcccatctctcatggtagaagcaaacatattgagactagatttcgtttcatttggaagcaggtgactaatggtatgattgagttgcagtat |
9238425 |
T |
|
| Q |
428 |
tgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238424 |
tgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgaggaaaaaact |
9238345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 202 - 500
Target Start/End: Original strand, 5706756 - 5707055
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
5706756 |
tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag |
5706855 |
T |
|
| Q |
302 |
attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtga |
401 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||| ||| |||||||||| ||||| ||||| | ||||| ||||| | ||||||| || ||||||||| |
|
|
| T |
5706856 |
attgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaacacttagagaccagattccatttcattagggagcaagtga |
5706955 |
T |
|
| Q |
402 |
ctaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
||||||| ||||||||| |||| || || || ||| || | || ||||| ||||||||||| || | |||||||||||| |||||||||| ||||||| |
|
|
| T |
5706956 |
ctaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaa |
5707055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 170 - 506
Target Start/End: Original strand, 26904888 - 26905220
Alignment:
| Q |
170 |
caacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagctta |
269 |
Q |
| |
|
|||||||||| ||| || ||||| ||| || |||||| |||||| ||| ||||| |||||||||||| | ||||||||||||| ||||||||| | | |
|
|
| T |
26904888 |
caacctgttagtgcactttcatcctgtgaagttgagtaaattgcaagtatatttgatacatgtcaagccat-tggttggattcagtgatgaaagagatca |
26904986 |
T |
|
| Q |
270 |
agtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattga |
369 |
Q |
| |
|
|||| ||| |||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||||| || || |||||||||| ||||||||| ||||| |
|
|
| T |
26904987 |
agtgcgaa----tgaaacctctaacactgaagattgacaacaaatcagccataagtcttgctaagaaccctatttctcatggtataagcaaacacattga |
26905082 |
T |
|
| Q |
370 |
gactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagact |
468 |
Q |
| |
|
||||||||| | |||||| || |||| ||| ||||| ||||||||| | || |||||||||| | || ||||||||||| ||||||||| ||| || |
|
|
| T |
26905083 |
gactagattccacttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaactgcagcttgcatgtggctttacaaaggct |
26905182 |
T |
|
| Q |
469 |
ttgaagcttgacatatttgaatttttgaggaaaaaact |
506 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||| ||||| |
|
|
| T |
26905183 |
ttgaagcttgacaaatttaaatttttaaggaagaaact |
26905220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 202 - 462
Target Start/End: Original strand, 9880874 - 9881136
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||| |||| ||| |||||| |||| |||||| |||||||||| ||||||| |||||||||||||| |||||| | ||||||||||||| || | | |
|
|
| T |
9880874 |
tgagtatattgtaggaacattttctacttgtcaaactttgtggttagattcagtgatgaaagagcttaaatgtgaaattgtgaagcctctaaccctcata |
9880973 |
T |
|
| Q |
302 |
attgacaac-aagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagact-agattgcgtttcatttggaagcaagt |
399 |
Q |
| |
|
||||||||| || || ||||||| ||||| |||||||||||||| |||||||||||||| || || |||||| | ||| | ||| ||| || |||| | |
|
|
| T |
9880974 |
attgacaacaaaatctaccataagtcttgctaagaatcccatctcacatggtagaagcaagcacatagagactaaaattccattttattagggagcagat |
9881073 |
T |
|
| Q |
400 |
gactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac |
462 |
Q |
| |
|
||||||||| |||| |||| |||| |||||||| || | ||||| ||||||||||| ||||| |
|
|
| T |
9881074 |
gactaatggaatgaatgaggtgcaatattgtcccactgagttgcaacttgcagatggttttac |
9881136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 9238848 - 9238771
Alignment:
| Q |
154 |
caaacttacaaaaagccaacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9238848 |
caaacttacaaaaagccaacctgttattgcgctctcatcatgtgaatctgagtacattgcaggtacatttgctacatg |
9238771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 202 - 364
Target Start/End: Complemental strand, 2578 - 2416
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2578 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacattgaga |
2479 |
T |
|
| Q |
302 |
attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2478 |
attgacaacaagtcagccataagccttgtcaagaatcccatctctcatggtagaagcaaacat |
2416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 410 - 506
Target Start/End: Complemental strand, 2417 - 2320
Alignment:
| Q |
410 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
2417 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgaaatattttaatttttgaggaaaaaact |
2320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 185 - 506
Target Start/End: Complemental strand, 38099723 - 38099401
Alignment:
| Q |
185 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga |
284 |
Q |
| |
|
||||||| |||| || |||||||||||||||| ||||||| | |||||||||| ||| | |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
38099723 |
ctctcattatgtgaagttgagtacattgcaggtgcatttgcaatatgtcaagctctgttgctggattcaatgatgaaagagctcaagtgtgaagtgatga |
38099624 |
T |
|
| Q |
285 |
agcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgttt |
384 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||| ||||||| ||||| | |||||| || ||||||||||||| |||||| |||||||||||||| | ||| |
|
|
| T |
38099623 |
aacctctaacactgaagattgacaacaaatcaaccataagtcttgctaggaatcctatttctcatggtagaatcaaacacattgagactagattccattt |
38099524 |
T |
|
| Q |
385 |
catttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacata |
483 |
Q |
| |
|
|||| || ||| ||||||||||||||||||||| | || |||||||||||| ||||| |||| ||| |||||||||| ||| |||||||||||| |||| |
|
|
| T |
38099523 |
cattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgtagctagcatatggctttacaaaggctttgaagcttggcata |
38099424 |
T |
|
| Q |
484 |
tttgaatttttgaggaaaaaact |
506 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
38099423 |
tttgaatttttgaggaagaaact |
38099401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 203 - 500
Target Start/End: Original strand, 301926 - 302224
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
301926 |
gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa |
302025 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| ||||||| ||||| ||||| || || ||||| |||||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
302026 |
ttgacaacaaatcagccacaagtcttgcaaagaatctaatctcacatggcaggagtaaacacattgagaccagattcaatttcatttgagagcaggtgac |
302125 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
|||||| ||||||||| |||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
302126 |
taatggaatgattgagctgcactactgccccacaaaactacaacttgctgatggttttacaaaagcaatgaagcttgacagatttgaattcttgaggaa |
302224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 185 - 497
Target Start/End: Original strand, 3461355 - 3461668
Alignment:
| Q |
185 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga |
284 |
Q |
| |
|
|||||||||||| || |||||||| | ||||| |||||||| |||||||| | ||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
3461355 |
ctctcatcatgtgaagaagagtacataactggtacttttgctacttgtcaagcactatggttggattcagtgatgaaggaatttaagtgtgaagtgatga |
3461454 |
T |
|
| Q |
285 |
agcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgttt |
384 |
Q |
| |
|
||||||||||||||| |||||| || || ||||||||||| |||| |||||||| |||| ||||| || || ||||| |||||||| | ||| | ||| |
|
|
| T |
3461455 |
agcctctaacactgaaaattgataataaatcagccataagtcttgtaaagaatccaatcttacatggcaggagtaaacacattgagaccatattccattt |
3461554 |
T |
|
| Q |
385 |
catttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagcttgacata |
483 |
Q |
| |
|
||| | |||| ||||||||||| ||||||||| |||| ||||| || ||| || |||| ||||| ||||| ||||||| | | | |||||||||||| |
|
|
| T |
3461555 |
tattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaagcttgacata |
3461654 |
T |
|
| Q |
484 |
tttgaatttttgag |
497 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
3461655 |
tttgaattcttgag |
3461668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 203 - 500
Target Start/End: Complemental strand, 37787169 - 37786871
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
37787169 |
gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa |
37787070 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||| |||||||| | ||| | ||||||| | |||||||||| |
|
|
| T |
37787069 |
ttgacaacaaatcagccataagtcttgcaaagaatccaatctcacatggcagaagtaaacacattgagaccatattccatttcattagagagcaagtgac |
37786970 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
|||||| ||||||||| |||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
37786969 |
taatggaatgattgagctgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacagatttgaattcttgaggaa |
37786871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 332 - 506
Target Start/End: Original strand, 6414319 - 6414494
Alignment:
| Q |
332 |
aagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtc |
431 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||| ||||||| || |||| ||||||||||| ||||||||||||| || |||| |
|
|
| T |
6414319 |
aagaatcccatctctcatggcggaagcaaacacattgggactagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtc |
6414418 |
T |
|
| Q |
432 |
ctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaact |
506 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||| ||||||||||||| | |||| || |||||||||| ||||| |
|
|
| T |
6414419 |
ctacagaattgcagcttgcagatggttttacaaaggctttgaagcttgatagatttaaacttttgaggaagaaact |
6414494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 209 - 506
Target Start/End: Original strand, 14233709 - 14234007
Alignment:
| Q |
209 |
attgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgaca |
308 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| ||||||| ||||||| ||||| |||||||| |||||||| ||||||||||||| || |||||||||| |
|
|
| T |
14233709 |
attgcaagaacatttgctacttgtcaagctatgtggttagattcagtgatgaaggagcttaaatgtgaagtagtgaagcctctaaccctcagaattgaca |
14233808 |
T |
|
| Q |
309 |
acaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatgg |
408 |
Q |
| |
|
|||| || ||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| ||||| | ||||||| || |||| ||||||||||| |
|
|
| T |
14233809 |
acaaatcttccataagccttgctaagaatcctatctcacatggtagaagcaagcacattgagaccagattccatttcattagggagcaggtgactaatgg |
14233908 |
T |
|
| Q |
409 |
tatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaact |
506 |
Q |
| |
|
||||||||| |||| |||||||| || | |||| ||||||||||| ||||| ||| | | || ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
14233909 |
aatgattgaggtgcaatattgtcccactgagctgcaacttgcagatggttttactaaggcagtaaaacttgacagatttgaattttttaggaagaaact |
14234007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 500
Target Start/End: Original strand, 296659 - 296959
Alignment:
| Q |
201 |
ctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgag |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||| | ||| ||||||||| || |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
296659 |
ctgagtacattgcaggaacatttgctacttttcaagcactatggctggattcagtgataaaagagctcaagtgtgaagtgatgaagcctctgacactgaa |
296758 |
T |
|
| Q |
301 |
aattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtg |
400 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| |||||||||| | ||| ||||| |||||||| ||||| | ||||||| || |||| ||| |
|
|
| T |
296759 |
gattgacaacaaatcagccataagtcttgctaagaatcccgtctctcatggcaaaagtaaacacattgagaccagattccatttcattagggagcaggtg |
296858 |
T |
|
| Q |
401 |
actaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgagga |
499 |
Q |
| |
|
|||||||| ||||| |||||||| || || || ||| || | || |||| ||||| ||||||| | | ||||||||||| ||||||||| ||||||| |
|
|
| T |
296859 |
actaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggttttacaaaagcagcgaagcttgacacatttgaattcttgagga |
296958 |
T |
|
| Q |
500 |
a |
500 |
Q |
| |
|
| |
|
|
| T |
296959 |
a |
296959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 189 - 506
Target Start/End: Original strand, 30380226 - 30380543
Alignment:
| Q |
189 |
catcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcc |
288 |
Q |
| |
|
|||||||| || ||| ||||||| ||| || |||||||| ||||||||| | || |||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
30380226 |
catcatgtgaagttgaatacattgaaggaacttttgctacttgtcaagctctatgattggattcagtgatgaaagagctcaagtgtgaagtgatgaaacc |
30380325 |
T |
|
| Q |
289 |
tctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatt |
388 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| | ||| ||||| |||||||| ||||| | ||||||| |
|
|
| T |
30380326 |
tctaacactggagattgacaacaaatcagccataagtcttgcttagaatccaatctcacatggcaaaagtaaacacattgagaccagattccatttcatt |
30380425 |
T |
|
| Q |
389 |
tggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttg |
487 |
Q |
| |
|
| |||| ||||||||||| ||||||||| | || || | | | ||| || |||| |||||| |||| ||||||| | | ||||||||||||||||| |
|
|
| T |
30380426 |
agagagcaggtgactaatggaatgattgagctacactactatacaacagaactgcaacttgcatatgg-tttacaaaagcagtgaagcttgacatatttt |
30380524 |
T |
|
| Q |
488 |
aatttttgaggaaaaaact |
506 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30380525 |
aatttttgaggaaaaaact |
30380543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 429
Target Start/End: Original strand, 35898321 - 35898423
Alignment:
| Q |
327 |
ttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagta |
426 |
Q |
| |
|
|||| |||||||| || || ||||| || || ||||| |||||||| ||||| | ||||||| | |||| ||||||||||| ||||||||| |||| || |
|
|
| T |
35898321 |
ttgcaaagaatccaatatcacatggcaggagtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctgcacta |
35898420 |
T |
|
| Q |
427 |
ttg |
429 |
Q |
| |
|
||| |
|
|
| T |
35898421 |
ttg |
35898423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 202 - 500
Target Start/End: Complemental strand, 18641517 - 18641218
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
18641517 |
tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag |
18641418 |
T |
|
| Q |
302 |
attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtga |
401 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||| ||| |||||||||| ||||| ||||| | ||||| ||||| | ||||||| || ||||||||| |
|
|
| T |
18641417 |
attgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaacacttagagaccagattccatttcattagggagcaagtga |
18641318 |
T |
|
| Q |
402 |
ctaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
||||||| ||||||||| |||| || || || ||| || | || ||||| ||||||||||| || | |||||||||||| |||||||||| ||||||| |
|
|
| T |
18641317 |
ctaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaa |
18641218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 34982935 - 34983048
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||| |||||| | ||||||||||| ||||||| ||| |||||||| | ||| ||||||||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
34982935 |
tgagtatattgcatgaacatttgctacttgtcaagttttatggttggaattagcgatgaaagagctcaagtgtgaagtggtgaagcctctaacacagatg |
34983034 |
T |
|
| Q |
302 |
attgacaacaagtc |
315 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
34983035 |
attgacaataagtc |
34983048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 277 - 500
Target Start/End: Complemental strand, 50778598 - 50778374
Alignment:
| Q |
277 |
agtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactaga |
376 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || ||||||||||| ||||| |||||||| ||||| ||||| || || ||||| |||||||| ||| |
|
|
| T |
50778598 |
agtgatgaagcctctaacactgaaaattgataataaatcagccataagtcttgcaaagaatccaatctcacatggcaggagtaaacacattgagaccaga |
50778499 |
T |
|
| Q |
377 |
ttgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagc |
475 |
Q |
| |
|
|| | ||||||| | |||| ||||||||| | ||||||||| |||| ||||| || ||| || |||| ||||| ||||||||||||| | | | |||| |
|
|
| T |
50778498 |
ttccatttcattagagagcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatggctttacaaaggcagtaaagc |
50778399 |
T |
|
| Q |
476 |
ttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
50778398 |
ttgacagatttgaattttttaggaa |
50778374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 44536499 - 44536443
Alignment:
| Q |
181 |
tgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagc |
237 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
44536499 |
tgcgctctcatccagtaaaccagagtacattgcagaaacatttgctacttgtcaagc |
44536443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 203 - 500
Target Start/End: Original strand, 48910 - 49208
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||| || || || |||||||| || ||| | || ||| |||||| || ||||||||||| |||||||||||| | |||||||| ||||||| | |
|
|
| T |
48910 |
gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga |
49009 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||| |||||||||| ||||| ||||| ||| ||| ||||| | ||||||| | |||| ||||| |
|
|
| T |
49010 |
ttgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaagtaaacacatttcgaccagattccatttcattagagagcatgtgac |
49109 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
|||||| |||||||||||||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
49110 |
taatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaa |
49208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 203 - 500
Target Start/End: Original strand, 28248748 - 28249046
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||| || || || |||||||| || ||| | || ||| |||||| || ||||||||||| |||||||||||| | |||||||| ||||||| | |
|
|
| T |
28248748 |
gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga |
28248847 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||| |||||||||| ||||| ||||| ||| ||| ||||| | ||||||| | |||| ||||| |
|
|
| T |
28248848 |
ttgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaagtaaacacatttcgaccagattccatttcattagagagcatgtgac |
28248947 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
|||||| |||||||||||||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
28248948 |
taatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaa |
28249046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 29011291 - 29011197
Alignment:
| Q |
185 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagt |
279 |
Q |
| |
|
|||||||| ||| || ||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
29011291 |
ctctcatcttgtgaagctgagtatattgcaggaatatttgctacatgtcaagctttgtggttggattcagtgatgaatgaactcaagtgtgaagt |
29011197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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