View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17075_high_6 (Length: 346)

Name: NF17075_high_6
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17075_high_6
NF17075_high_6
[»] chr6 (7 HSPs)
chr6 (106-327)||(26047219-26047437)
chr6 (106-327)||(26049244-26049462)
chr6 (106-327)||(26065528-26065746)
chr6 (106-327)||(26070413-26070631)
chr6 (106-327)||(26085497-26085715)
chr6 (106-327)||(25524764-25524987)
chr6 (106-327)||(25516543-25516762)
[»] chr4 (3 HSPs)
chr4 (31-77)||(23499443-23499489)
chr4 (16-72)||(29391162-29391218)
chr4 (16-77)||(9521884-9521945)
[»] chr7 (3 HSPs)
chr7 (16-77)||(19267374-19267435)
chr7 (25-77)||(30969761-30969813)
chr7 (16-77)||(38603007-38603068)
[»] chr8 (1 HSPs)
chr8 (31-77)||(39421528-39421574)
[»] chr2 (1 HSPs)
chr2 (16-79)||(35112498-35112560)
[»] chr1 (1 HSPs)
chr1 (25-77)||(3279409-3279461)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 26047219 - 26047437
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26047219 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26047316  T
Q  206 gcaataaaaaacgggagttggca--agtataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 303  Q
    |||| |||| | | |||||||||  ||||||||||||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||||||| ||    
T  26047317 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctg---ctataacatgttaaagttaccaaacatgtcataaga 26047413  T
Q  304 attggaaccaataaatgtcatgct 327  Q
    ||||||||||||||||||||||||    
T  26047414 attggaaccaataaatgtcatgct 26047437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 26049244 - 26049462
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26049244 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26049341  T
Q  206 gcaataaaaaacgggagttggca--agtataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 303  Q
    |||| |||| | | |||||||||  ||||||||||||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||||||| ||    
T  26049342 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctg---ctataacatgttaaagttaccaaacatgtcataaga 26049438  T
Q  304 attggaaccaataaatgtcatgct 327  Q
    ||||||||||||||||||||||||    
T  26049439 attggaaccaataaatgtcatgct 26049462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 26065528 - 26065746
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26065528 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26065625  T
Q  206 gcaataaaaaacgggagttggca--agtataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 303  Q
    |||| |||| | | |||||||||  ||||||||||||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||||||| ||    
T  26065626 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctg---ctataacatgttaaagttaccaaacatgtcataaga 26065722  T
Q  304 attggaaccaataaatgtcatgct 327  Q
    ||||||||||||||||||||||||    
T  26065723 attggaaccaataaatgtcatgct 26065746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 26070413 - 26070631
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26070413 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26070510  T
Q  206 gcaataaaaaacgggagttggca--agtataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 303  Q
    |||| |||| | | |||||||||  ||||||||||||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||||||| ||    
T  26070511 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctg---ctataacatgttaaagttaccaaacatgtcataaga 26070607  T
Q  304 attggaaccaataaatgtcatgct 327  Q
    ||||||||||||||||||||||||    
T  26070608 attggaaccaataaatgtcatgct 26070631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 26085497 - 26085715
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26085497 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26085594  T
Q  206 gcaataaaaaacgggagttggca--agtataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 303  Q
    |||| |||| | | |||||||||  ||||||||||||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||||||| ||    
T  26085595 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctg---ctataacatgttaaagttaccaaacatgtcataaga 26085691  T
Q  304 attggaaccaataaatgtcatgct 327  Q
    ||||||||||||||||||||||||    
T  26085692 attggaaccaataaatgtcatgct 26085715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 25524764 - 25524987
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||| |||||||||||| ||||||||    
T  25524764 ctgctatttttccctctcctgatttcttccttcccctctcatgtctcacatatcgtctccctccacctctttttctgtctgtgattgttcgcataacaat 25524863  T
Q  206 gcaataaaaaacgggagttggca--agtataatccatgcaaccagaatgagatcaatgctgctactataacatg---ttaaggttaccaaacatgtcata 300  Q
    |||| |||| | | |||||||||  |||||||||||||||  |||||||||||||||||||   ||||||||||   |||| ||||||||||||||||||    
T  25524864 gcaacaaaacatgagagttggcaagagtataatccatgcagtcagaatgagatcaatgctg---ctataacatgtacttaaagttaccaaacatgtcata 25524960  T
Q  301 cgaattggaaccaataaatgtcatgct 327  Q
     ||||||||||||||||||||||||||    
T  25524961 agaattggaaccaataaatgtcatgct 25524987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 25516543 - 25516762
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||| | |||||||||| || ||||     
T  25516543 ctgctatttttccctttcctgatttctcccttccactctcatgtctcacttatcatctccctccatctctttttctgtctttgattgttcgcat-acaac 25516641  T
Q  206 gcaataaaaaacgggagttggc--aagtataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 303  Q
    |||| |||| | | ||||||||  ||||||||||||||||  |||||||||| |||   |||| |||||||||||||| |||||||||||||||||| ||    
T  25516642 gcaacaaaacatgagagttggcaaaagtataatccatgcaggcagaatgagaacaa---tgcttctataacatgttaaagttaccaaacatgtcataaga 25516738  T
Q  304 attggaaccaataaatgtcatgct 327  Q
    |||||||| ||||| |||||||||    
T  25516739 attggaacgaataattgtcatgct 25516762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 23499489 - 23499443
Alignment:
Q  31 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  23499489 gtaaagtgagaaaattaagggttgttattttaacaaactcatgattt 23499443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 29391162 - 29391218
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcat 72  Q
    |||| ||||||||| ||||||| |||||| | |||||||||||| ||||||||||||    
T  29391162 taaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat 29391218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 9521945 - 9521884
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||| ||| ||||| ||||||||||||||  || |||||| | |||||||||||||||||||    
T  9521945 taaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgattt 9521884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 19267435 - 19267374
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  19267435 taaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 30969761 - 30969813
Alignment:
Q  25 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgattt 30969813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 38603007 - 38603068
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||| ||||| ||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  38603007 taaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgattt 38603068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 39421528 - 39421574
Alignment:
Q  31 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  39421528 gtaaagtgagaaaatcaaaggttgttattttaacaaactcatgattt 39421574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 35112498 - 35112560
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattttt 79  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  35112498 taaattggttaaagtgtaaagtgagaaaa-taagggttgttattataacaagctcataattttt 35112560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 3279409 - 3279461
Alignment:
Q  25 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    ||||| ||||||||||||||  |||||||||| ||| |||||||| |||||||    
T  3279409 taaagtgtaaagtgagaaaatgaagggttgttttttaaacaaacttatgattt 3279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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