View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17075_low_10 (Length: 262)
Name: NF17075_low_10
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17075_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 21159264 - 21159486
Alignment:
| Q |
13 |
aaaatacaatgtgcaaacgcataaaaggagagtgggcatagaagtactattatagttttgctttttggaaataaattagaataggtaaaggcacaagaaa |
112 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21159264 |
aaaatataatgtgcaaacgcttaaaaggagagtgggaatggaagtactattatagttttgctttttggaaataaattagaataggtaaaggcacacaaaa |
21159363 |
T |
|
| Q |
113 |
ataaagcataatagaatctatcaaatatattagcatttgcatatgcatttgccctcacacgttaagtgaaagaagccaaagaaggtagacacatatatgt |
212 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21159364 |
ataaagcataataaaatctatgaaatatatta------------gcaattgccctcacacgttaagtgaaagaagccaaagaaggcagacacatatatgt |
21159451 |
T |
|
| Q |
213 |
ctcccatgaagggtgtgatatggtccctacaacct |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
21159452 |
ctcccatgaagggtgtgatatggtccctacaacct |
21159486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University