View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17075_low_12 (Length: 234)
Name: NF17075_low_12
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17075_low_12 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 45187440 - 45187658
Alignment:
| Q |
9 |
attattcaggaaatgcttccaatggctgataattttaccactatgcttttttatttgttaaacaggttgtctccgcattaacaatccttgacaacgatgg |
108 |
Q |
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| T |
45187440 |
attattcaggaaatacttccaacggctgataattttaccactatgcttttttatttgttaaacaggttgtctccgcattaacaatccttgacaacgatgg |
45187539 |
T |
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| Q |
109 |
ttctatggagcttgtgaaagaaccgcaactcaaaactttgagaagccacaaatcacattcgtcacccgagcaaaggacactctcaacgaatggagttgta |
208 |
Q |
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| T |
45187540 |
ttctatggagcttgtgaaagaactgcaactcaaaactttgggaagccacaaatcacattcgtcactcgagcaaaggacactctcaacgaatggagttgta |
45187639 |
T |
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| Q |
209 |
tgcaaagagcaaagttatt |
227 |
Q |
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| T |
45187640 |
tgcaaagagcaaagttatt |
45187658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 23600658 - 23600606
Alignment:
| Q |
172 |
acccgagcaaaggacactctcaacgaatggagttgtatgcaaagagcaaagtt |
224 |
Q |
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| T |
23600658 |
accctagctaaggacactctcaacgaatggagttgtatgcaaagaacaaagtt |
23600606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Complemental strand, 6352912 - 6352882
Alignment:
| Q |
194 |
acgaatggagttgtatgcaaagagcaaagtt |
224 |
Q |
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| T |
6352912 |
acgaatggagttgtatgcaaagagcaaagtt |
6352882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 33978664 - 33978635
Alignment:
| Q |
196 |
gaatggagttgtatgcaaagagcaaagtta |
225 |
Q |
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| T |
33978664 |
gaatggagttgtatgcaaagagcaaagtta |
33978635 |
T |
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Target: scaffold0130 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 13741 - 13688
Alignment:
| Q |
169 |
gtcacccgagcaaaggacactctcaacgaatggagttgtatgcaaagagcaaag |
222 |
Q |
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| T |
13741 |
gtcactcgcgcaaaggacacactaaatgaatggagttgtatgcaacgagcaaag |
13688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 11629072 - 11629125
Alignment:
| Q |
169 |
gtcacccgagcaaaggacactctcaacgaatggagttgtatgcaaagagcaaag |
222 |
Q |
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| T |
11629072 |
gtcactcgcgcaaaggacacactaaatgaatggagttgtatgcaacgagcaaag |
11629125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 34753198 - 34753145
Alignment:
| Q |
169 |
gtcacccgagcaaaggacactctcaacgaatggagttgtatgcaaagagcaaag |
222 |
Q |
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| T |
34753198 |
gtcactcgcgcaaaggacacactaaatgaatggagttgtatgcaacgagcaaag |
34753145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 31802071 - 31802100
Alignment:
| Q |
196 |
gaatggagttgtatgcaaagagcaaagtta |
225 |
Q |
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| T |
31802071 |
gaatggagttgtatgcaaagagcaaagtta |
31802100 |
T |
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