View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17075_low_3 (Length: 520)
Name: NF17075_low_3
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17075_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 26880303 - 26880546
Alignment:
| Q |
2 |
catcaacatctatctctgatttaacaacggcatgatccttatttggagataatttatctgaatcaatttgtattatcatccatcaagctaaagaagtaga |
101 |
Q |
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| T |
26880303 |
catcaacatctatctctgatttaacagcggcatgatccttatttggagataatttatctgaatcaatttgtattatcatccatcaagctaaagaagtaga |
26880402 |
T |
|
| Q |
102 |
acaaatt---tcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatga |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26880403 |
acaaattatttcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatga |
26880502 |
T |
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| Q |
199 |
aaatacaatgtaagacgaaatttcaagagtatctataatgactg |
242 |
Q |
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| T |
26880503 |
aaatacaatgtaagacgaaatttcaagagtatctataatgactg |
26880546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 290 - 497
Target Start/End: Original strand, 26880547 - 26880754
Alignment:
| Q |
290 |
cattactggtatcatcaaaatacaaaactttcatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
389 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26880547 |
cattactgttatcatcaaaatacaaaacttttatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
26880646 |
T |
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| Q |
390 |
aaaaattaagatggtaagagtttatggaaatgaacatacctatgcctcccatataaactctcaagctgagaaacaaatttagcaaagcatcgcactccat |
489 |
Q |
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| T |
26880647 |
gaaaattaagatggtaagagtttatggaaatgaacatacctatgcctcccctataaactctcaagctgagaaacaaatttagcaaagcatcgcactccat |
26880746 |
T |
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| Q |
490 |
tgccacat |
497 |
Q |
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|||||||| |
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| T |
26880747 |
tgccacat |
26880754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 40251754 - 40251833
Alignment:
| Q |
417 |
aaatgaacatacctatgcctcccatataaactctcaagctgagaaacaaatttagcaaagcatcgcactccattgccaca |
496 |
Q |
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||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40251754 |
aaatgaacaaacctgtgcctcccatgtaaactctcaagctgagaaacaaatttggcaaagcatcgcactccattgccaca |
40251833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 40249842 - 40249897
Alignment:
| Q |
2 |
catcaacatctatctctgatttaacaacggcatgatccttatttggagataattta |
57 |
Q |
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| T |
40249842 |
catcaacatctatctctgatttaacaacagcatgatccttatttggagataattta |
40249897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 40250196 - 40250245
Alignment:
| Q |
177 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaaga |
226 |
Q |
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||||||||||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
40250196 |
atggtgaaactgcaaaatatgaaaatataatgtaagacgaaatttcaaga |
40250245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 40707441 - 40707502
Alignment:
| Q |
177 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatg |
238 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||| |
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| T |
40707441 |
atggtgaaactacaaagtatgaaaatataatgtaagacagaattttaagaatatctataatg |
40707502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 15161003 - 15161043
Alignment:
| Q |
62 |
aatcaatttgtattatcatccatcaagctaaagaagtagaa |
102 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||| |
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| T |
15161003 |
aatcaatttatattatcatcaatcaagctaaagaagcagaa |
15161043 |
T |
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