View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17075_low_4 (Length: 351)
Name: NF17075_low_4
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17075_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 9003051 - 9002731
Alignment:
| Q |
11 |
cacagagtcaagtgaattacatcaactatgaattagaaattgggagtgtttgtaaagatatatatatatttctcactaccnnnnnnnnn---cgatattc |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
9003051 |
cacaaagtcaagtgaattacatcaactatgagttagaaattgggagtgtttgtaaagacatatat----ttctcactaccaaaaaaaaaaaacgatattc |
9002956 |
T |
|
| Q |
108 |
actaccnnnnnnngacatatatatttcctaacaatatataactactcacaaggacatctaaagttgaaagtacatctaaagcatcctctttttcttcttc |
207 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9002955 |
actaccaaaaaaagacatatat--ttcctaacaatatataactactcacaaggacatctaaagttgaaagtacatctaaagaatcctcttcttcttcttc |
9002858 |
T |
|
| Q |
208 |
ttccatagtctatcctttattaacaatgttgtcagtactatttctacttgctctatgcctaattattcctttgctaatattcttccaaaaccatagaaca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9002857 |
ttccatagtctatcctttattaacaatgttgtcagtactatttctacttgctctatgcctaattattcctttgctaatattcttccaaaaccatagaaca |
9002758 |
T |
|
| Q |
308 |
attaaacattatccacttggtcctaaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9002757 |
attaaacattatccacttggtcctaaa |
9002731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 9027026 - 9027132
Alignment:
| Q |
228 |
taacaatgttgtcagtactatttctacttgctctatgcctaattattcctttgctaatattcttccaaaaccatagaacaattaaacattatccacttgg |
327 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9027026 |
taacaatgttgtcaatactaattctacttgctctatgcctaattcttcctttgctaatattcttccaaaaccatagaaccattaaacattatccacttgg |
9027125 |
T |
|
| Q |
328 |
tcctaaa |
334 |
Q |
| |
|
||||||| |
|
|
| T |
9027126 |
tcctaaa |
9027132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 8975274 - 8975361
Alignment:
| Q |
228 |
taacaatgttgtcagtactatttctacttgctctatgcctaattattcctttgctaatattcttccaaaaccatagaacaattaaaca |
315 |
Q |
| |
|
||||||||||| || | ||||||||| ||| |||||||||||||||||| ||| |||| |||||||| || |||||||| |||||||| |
|
|
| T |
8975274 |
taacaatgttgccactgctatttctatttgttctatgcctaattattccattgttaatgttcttccacaaacatagaaccattaaaca |
8975361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University