View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17075_low_5 (Length: 351)

Name: NF17075_low_5
Description: NF17075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17075_low_5
NF17075_low_5
[»] chr1 (6 HSPs)
chr1 (7-335)||(24309748-24310076)
chr1 (109-333)||(24339987-24340211)
chr1 (7-278)||(24322090-24322361)
chr1 (71-335)||(24415408-24415672)
chr1 (13-326)||(24366735-24367049)
chr1 (13-55)||(24365193-24365235)
[»] scaffold0508 (2 HSPs)
scaffold0508 (152-333)||(11835-12016)
scaffold0508 (13-61)||(12155-12203)
[»] chr4 (35 HSPs)
chr4 (165-324)||(48862823-48862985)
chr4 (193-278)||(7904660-7904745)
chr4 (175-284)||(7771026-7771135)
chr4 (193-284)||(7774194-7774285)
chr4 (153-290)||(33134148-33134288)
chr4 (192-325)||(45366582-45366718)
chr4 (190-284)||(45372419-45372513)
chr4 (175-284)||(7789711-7789820)
chr4 (193-278)||(7877348-7877433)
chr4 (190-283)||(48891032-48891125)
chr4 (177-284)||(7907947-7908054)
chr4 (199-322)||(45385158-45385281)
chr4 (191-253)||(7765274-7765336)
chr4 (181-278)||(7238073-7238170)
chr4 (190-287)||(48156789-48156886)
chr4 (157-286)||(48870162-48870291)
chr4 (157-286)||(48885848-48885977)
chr4 (165-278)||(49041475-49041588)
chr4 (165-284)||(7822591-7822710)
chr4 (153-278)||(33133665-33133793)
chr4 (198-287)||(48735682-48735774)
chr4 (175-287)||(48148029-48148144)
chr4 (191-263)||(7786086-7786158)
chr4 (153-283)||(48170911-48171044)
chr4 (198-276)||(49044599-49044677)
chr4 (165-284)||(7800259-7800378)
chr4 (195-284)||(7813102-7813191)
chr4 (193-278)||(48875474-48875559)
chr4 (190-278)||(37827356-37827444)
chr4 (163-242)||(48852321-48852403)
chr4 (222-284)||(48902572-48902634)
chr4 (13-61)||(45372257-45372305)
chr4 (190-242)||(50251170-50251222)
chr4 (225-276)||(49048996-49049047)
chr4 (193-278)||(48898350-48898438)
[»] chr5 (6 HSPs)
chr5 (190-301)||(29695757-29695868)
chr5 (190-287)||(29712831-29712928)
chr5 (190-287)||(1812044-1812141)
chr5 (225-287)||(42562728-42562790)
chr5 (190-287)||(29687670-29687767)
chr5 (226-315)||(178610-178699)
[»] chr8 (6 HSPs)
chr8 (165-287)||(15348481-15348603)
chr8 (205-284)||(12199929-12200008)
chr8 (205-284)||(12444357-12444436)
chr8 (176-322)||(4032264-4032410)
chr8 (201-284)||(12194923-12195006)
chr8 (201-284)||(12439351-12439434)
[»] chr3 (4 HSPs)
chr3 (198-326)||(11006332-11006460)
chr3 (175-287)||(11024884-11024996)
chr3 (175-287)||(11015872-11015984)
chr3 (190-284)||(47452269-47452363)
[»] chr6 (1 HSPs)
chr6 (189-287)||(21015395-21015493)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 24310076 - 24309748
Alignment:
Q  7 tccaagaatataaaacctctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcag 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310076 tccaacaatataaaacctctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcag 24309977  T
Q  107 aagtaaacaatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24309976 aagtaaacaatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtga 24309877  T
Q  207 atttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaagattttggtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24309876 atttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaagattttggtg 24309777  T
Q  307 atcaattcatcaggcagatatggtggttg 335  Q
    |||||||||||||||||||||||||||||    
T  24309776 atcaattcatcaggcagatatggtggttg 24309748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 109 - 333
Target Start/End: Complemental strand, 24340211 - 24339987
Alignment:
Q  109 gtaaacaatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaat 208  Q
    |||||||| ||||||| ||||||| ||||||| |||||| || |||| | ||||||||||||| | |||||||||| || ||||| |||||| |||||||    
T  24340211 gtaaacaacgaatctacagctatatatcgaaactcaggagttgctgtcaggaagagaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaat 24340112  T
Q  209 ttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaagattttggtgat 308  Q
    |||||||||||  |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24340111 ttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaaccttactaagattttggtgat 24340012  T
Q  309 caattcatcaggcagatatggtggt 333  Q
    |||||||||||| ||||||||||||    
T  24340011 caattcatcaggaagatatggtggt 24339987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 24322361 - 24322090
Alignment:
Q  7 tccaagaatataaaacctctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcag 106  Q
    ||||| |||||| | ||||||||||||||| |||||||||||||||||| ||||||||||||   ||||||||||| || |||| |||||||||||||||    
T  24322361 tccaacaatatataccctctacatgaacctctaactttaagatcaaaataagatttaggaagcaaaaaattagggtccagtagaacaggagcagaatcag 24322262  T
Q  107 aagtaaacaatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtga 206  Q
      || |||||||||||||||| |||||||||||||| ||||||| ||||||  || ||||||| ||| |||||||||| || ||||    |||| |||||    
T  24322261 tggtgaacaatgaatctaaaggtatagatcgaaattgaggaatttctgttacaaacagaattcgacgagtgtgtgttgcagcagtattcagaaactgtga 24322162  T
Q  207 atttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 278  Q
    |||||||||  ||| ||  |||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  24322161 atttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagactt 24322090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 71 - 335
Target Start/End: Complemental strand, 24415672 - 24415408
Alignment:
Q  71 caaaattagggttcaatagagcaggagcagaatcagaagtaaa-caatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattc 169  Q
    ||||||||||||| | || || ||||||||||| |   ||||| ||||||||| |||||||| ||||||| ||||| | |  |||||| ||| |||||||    
T  24415672 caaaattagggttaagtaaagtaggagcagaatgatcggtaaaacaatgaatccaaagctatggatcgaagttcagaagtctctgttacgaacagaattc 24415573  T
Q  170 tacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaat 269  Q
     ||| |||||||||| || |||||  ||||| ||||||||||||||    || |  || ||||||||||||||  |||||| |||| |||||||||||||    
T  24415572 gacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaaactggattt-gaaataagagaaaaccaagacttacgaacgcatttgaaacgaat 24415474  T
Q  270 aagagacttaaccggtaatcttactaagattttggtgatcaattcatcaggcagatatggtggttg 335  Q
    ||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||    
T  24415473 aagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagatatggtggttg 24415408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 24367049 - 24366735
Alignment:
Q  13 aatataaaacctctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaa 112  Q
    |||||||| |||| ||||||||||  ||   | |||||||||| |||||| |||||   |||| ||||||||| || ||  |||| ||||||| | ||||    
T  24367049 aatataaaccctcgacatgaaccttcaatggtcagatcaaaatcagatttgggaagcaaaaaaatagggttcagtaaagttggagaagaatcatatgtaa 24366950  T
Q  113 acaatgaatctaaa-gctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttg 211  Q
    |||||||||||||| ||||||||| |||||| | || ||  ||| | ||| ||||||  | |  ||||||||| || |||||  ||||| ||||||||||    
T  24366949 acaatgaatctaaaagctatagattgaaattgatgatttggtgtcaagaacagaatttgatgattgtgtgttgcagcagtaatctgaaactgtgaatttg 24366850  T
Q  212 caaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaagattttggtgatcaa 311  Q
    |||||| || ||  |||||||||||||||||| |||| |||||  ||||||||||||| ||||  | ||| ||||| || |  | ||||| ||| |||||    
T  24366849 caaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagtttcaactggtaacctcagcaggatttgggtaatcaa 24366750  T
Q  312 ttcatcaggcagata 326  Q
    ||||||||| |||||    
T  24366749 ttcatcaggaagata 24366735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 24365235 - 24365193
Alignment:
Q  13 aatataaaacctctacatgaacctataactttaagatcaaaat 55  Q
    ||||| || ||||||||||||||||||| ||||||||||||||    
T  24365235 aatatgaaccctctacatgaacctataattttaagatcaaaat 24365193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 152 - 333
Target Start/End: Complemental strand, 12016 - 11835
Alignment:
Q  152 ctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttaca 251  Q
    |||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  12016 ctgttaagaacagaatcctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttaca 11917  T
Q  252 aacggatttgaaacgaataagagacttaaccggtaatcttactaagattttggtgatcaattcatcaggcagatatggtggt 333  Q
    ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  11916 aacggatttgaaacggataagagacttaatcggtaaccttactaagattttggtgatcaattcatcaggaagatatggtggt 11835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 12203 - 12155
Alignment:
Q  13 aatataaaacctctacatgaacctataactttaagatcaaaatgagatt 61  Q
    |||||||| | ||||||||||||| ||| || |||||||||||||||||    
T  12203 aatataaaccttctacatgaacctttaatttgaagatcaaaatgagatt 12155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 165 - 324
Target Start/End: Complemental strand, 48862985 - 48862823
Alignment:
Q  165 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataacttacaaacggatttg 261  Q
    ||||||| ||||||||||||  | |||||||||||||||||||||||||||||||| ||||   |||||||||||||||||  |||| |||||| |||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  262 aaacgaataagagacttaaccggtaatcttactaagattttggtgatcaattcatcaggcaga 324  Q
    ||||||||||||||||| |||||||| ||||  | ||||  | |||||||||||| |||||||    
T  48862885 aaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 7904745 - 7904660
Alignment:
Q  193 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 278  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagactt 7904660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 7771135 - 7771026
Alignment:
Q  175 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 274  Q
    |||||||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||| |||||||||  |||||||    
T  7771135 gtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagag 7771036  T
Q  275 acttaaccgg 284  Q
    |||| |||||    
T  7771035 acttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 7774194 - 7774285
Alignment:
Q  193 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||| |||||    
T  7774194 agttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 33134148 - 33134288
Alignment:
Q  153 tgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataactta 249  Q
    ||||||||| | |||| |||  ||||||||||| |  || | |||||||||||||||||||||||||| ||||   |||||||||||||| ||   ||||    
T  33134148 tgttatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggctta 33134247  T
Q  250 caaacggatttgaaacgaataagagacttaaccggtaatct 290  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  33134248 caaacgcatttgaaacgaataagagacttcaccggtaatct 33134288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 45366582 - 45366718
Alignment:
Q  192 aagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaat 288  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||||||  ||||||||||| | |||||||| ||||||||||| || |||||     
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  289 cttactaagattttggtgatcaattcatcaggcagat 325  Q
    |||| || ||||| | | |||||||||| ||| ||||    
T  45366682 cttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 45372419 - 45372513
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    |||| ||||||||||||||||||||| |||| ||||||||||| |||||||||  ||||||||||  |||||||||| ||||||||||| |||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccgg 45372513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 7789820 - 7789711
Alignment:
Q  175 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 274  Q
    ||||||||||  || | ||||||||||||||||||| ||||||||| ||| ||||||| |||||||||  ||||||||||| |||||||||  |||||||    
T  7789820 gtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagag 7789721  T
Q  275 acttaaccgg 284  Q
    |||| |||||    
T  7789720 acttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 7877433 - 7877348
Alignment:
Q  193 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 278  Q
    ||||||||||||||||||||||| |  | ||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 7877348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 48891125 - 48891032
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccg 283  Q
    |||||||||||||| ||||||||||| |||| ||| |||| ||||||||||||  ||||||||||| |||||||||| ||||||||||| ||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccg 48891032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 7908054 - 7907947
Alignment:
Q  177 gtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 276  Q
    |||| ||| ||| |||||||||||||||||||||||||| || | | |||||||||||||||||||| |||||| ||| || ||||||||  ||||||||    
T  7908054 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagac 7907955  T
Q  277 ttaaccgg 284  Q
    || |||||    
T  7907954 ttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 45385158 - 45385281
Alignment:
Q  199 aaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaaga 298  Q
    |||||||||| ||||||||| | ||| ||||  |||||||||||  |||||||||||||||||||||| || ||||||||||| ||||| |||| || ||    
T  45385158 aaatgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtagga 45385257  T
Q  299 ttttggtgatcaattcatcaggca 322  Q
    ||| | | |||||||||| |||||    
T  45385258 tttggatcatcaattcattaggca 45385281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 7765336 - 7765274
Alignment:
Q  191 taagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaa 253  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaa 7765274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 7238073 - 7238170
Alignment:
Q  181 gttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 278  Q
    |||| ||| ||| |||| ||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||  |||||||||  |||||||||||    
T  7238073 gttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagactt 7238170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 48156789 - 48156886
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 287  Q
    |||| ||||||||| ||||||||||| |||| ||| |||||||||||||||||  ||||||||||| | |||||||| | ||||||||| ||||||||    
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaa 48156886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 286
Target Start/End: Complemental strand, 48870291 - 48870162
Alignment:
Q  157 atgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacgg 256  Q
    ||||| ||||| ||||| ||||||||||  |  || || ||||||||||||||||||||  | | ||| ||||||||| |||||||  |||||||||||     
T  48870291 atgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgc 48870192  T
Q  257 atttgaaacgaataagagacttaaccggta 286  Q
    ||||||||||||||||||| || |||||||    
T  48870191 atttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 286
Target Start/End: Complemental strand, 48885977 - 48885848
Alignment:
Q  157 atgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacgg 256  Q
    ||||| ||||| ||||| ||||||||||  |  || || ||||||||||||||||||||  | | ||| ||||||||| |||||||  |||||||||||     
T  48885977 atgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgc 48885878  T
Q  257 atttgaaacgaataagagacttaaccggta 286  Q
    ||||||||||||||||||| || |||||||    
T  48885877 atttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 49041475 - 49041588
Alignment:
Q  165 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 264  Q
    |||||||||| |||| ||||  |  ||||||| |||||| ||||||||||| || | |||||||||||||||||||||  |||| |||||| ||||||||    
T  49041475 aattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaa 49041574  T
Q  265 cgaataagagactt 278  Q
    | ||||||||||||    
T  49041575 caaataagagactt 49041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 7822710 - 7822591
Alignment:
Q  165 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 264  Q
    ||||||||| || ||||||| ||  || | |||||| ||||||||||||||||| | |||||||||||||||||||||| | ||||||||  | ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  265 cgaataagagacttaaccgg 284  Q
    || |||||| |||| |||||    
T  7822610 cgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 33133793 - 33133665
Alignment:
Q  153 tgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataactta 249  Q
    ||||||||| | |||| |||  ||||||||||| |  || | ||||||||| |||||||||||||||  ||||   ||||||||||||||||| | ||||    
T  33133793 tgttatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagctta 33133694  T
Q  250 caaacggatttgaaacgaataagagactt 278  Q
    |||| | ||||||||||||||||||||||    
T  33133693 caaatgaatttgaaacgaataagagactt 33133665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 48735682 - 48735774
Alignment:
Q  198 aaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 287  Q
    |||||||||||||||||| | || ||||   |||||||||||||||||  ||||||||||  |||||||||||||||||||||| ||||||||    
T  48735682 aaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaa 48735774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 48148029 - 48148144
Alignment:
Q  175 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataacttacaaacggatttgaaacgaataa 271  Q
    |||||| ||||||  || |||| ||||||||||||||| ||||||| ||||   |||||||||||||||||  ||||||| ||  |||||||||||||||    
T  48148029 gtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataa 48148128  T
Q  272 gagacttaaccggtaa 287  Q
    ||||||| || |||||    
T  48148129 gagacttcactggtaa 48148144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 7786158 - 7786086
Alignment:
Q  191 taagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaa 263  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||||| ||||| |||||||||| |||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaa 7786086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 48170911 - 48171044
Alignment:
Q  153 tgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatc---agagataagagaaaaccataactta 249  Q
    ||||||||| | |||| |||| ||||||||| | |  |||| ||||||||| |||||||||||||||| |||   ||||||||||| ||||||  |||||    
T  48170911 tgttatgaacataattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagactta 48171010  T
Q  250 caaacggatttgaaacgaataagagacttaaccg 283  Q
    |||||  |||||||||| | ||||||||| ||||    
T  48171011 caaacacatttgaaacgtagaagagacttcaccg 48171044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 49044599 - 49044677
Alignment:
Q  198 aaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 276  Q
    ||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||  | |||||||| | |||||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagac 49044677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 7800378 - 7800259
Alignment:
Q  165 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 264  Q
    ||||||||| || ||||||| ||  || | |||||| ||||||||||||||| | | |||||||| ||||||||||||| | ||||||||  | ||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaa 7800279  T
Q  265 cgaataagagacttaaccgg 284  Q
    || |||||| |||| |||||    
T  7800278 cgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 7813191 - 7813102
Alignment:
Q  195 ttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    |||||| ||||| ||||||||||| |  ||||||||||||||||||||| | ||||||||  | |||||||| |||||| |||| |||||    
T  7813191 ttgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  193 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 278  Q
    ||||||||||||||||||| ||| || |  || ||||| |||||||||||  |||| |||||| ||||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 37827356 - 37827444
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 278  Q
    ||||||||||||||||||||||||||||  | || ||| |||||||  |||||| ||||||||||| || | ||||  |||||||||||    
T  37827356 gtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagactt 37827444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 48852403 - 48852321
Alignment:
Q  163 agaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaa---tcagagataagagaaaacca 242  Q
    ||||||||||| ||||||||||| | ||||| || |||||| |||||||||||||||| |   | ||||||||||||||||||    
T  48852403 agaattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaacca 48852321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 48902634 - 48902572
Alignment:
Q  222 atcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    |||||| ||||||||||||||  ||||||||||  ||||||||||||| |||||||| |||||    
T  48902634 atcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 45372257 - 45372305
Alignment:
Q  13 aatataaaacctctacatgaacctataactttaagatcaaaatgagatt 61  Q
    |||||||| ||||||||||||||| ||| || |||||||||||||||||    
T  45372257 aatataaaccctctacatgaacctttaatttcaagatcaaaatgagatt 45372305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 50251170 - 50251222
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacca 242  Q
    ||||||||||||||  |||||||| |||| | |||||||||||||||||||||    
T  50251170 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 50251222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 49048996 - 49049047
Alignment:
Q  225 agagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 276  Q
    ||||||||||||||||||||||||||||||  | |||||||| | |||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagac 49049047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 48898438 - 48898350
Alignment:
Q  193 agttgaaaatgtgaatttgcaaagtgagaatc---agagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 278  Q
    |||||||||||||||||||||||||| | |||   ||||||||| || |||||  ||||||||||  | ||||||||  ||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagactt 48898350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 29695868 - 29695757
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatc 289  Q
    |||||||||||||||||||||||||||||||  | ||| |||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||| |    
T  29695868 gtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaacc 29695769  T
Q  290 ttactaagattt 301  Q
    ||| || |||||    
T  29695768 ttaataggattt 29695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 29712831 - 29712928
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 287  Q
    ||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  29712831 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 29712928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 1812141 - 1812044
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 287  Q
    ||||||||||||||  ||||||||||||| | ||  |||||||||||||||||||||||||||||  ||||| |||| || ||| |||| || |||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaa 1812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 42562728 - 42562790
Alignment:
Q  225 agagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 287  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||||||| || ||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaa 42562790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 29687767 - 29687670
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 287  Q
    |||||||||||||| ||||||||||||||||  | ||| || |||||||||||  ||||||||||  | ||||| || ||||||||||| || |||||    
T  29687767 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaa 29687670  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 178699 - 178610
Alignment:
Q  226 gagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaagattttggtgatcaattca 315  Q
    ||||| ||||| |||||  ||||||||||  ||||||||||||||||||||||||| ||||| |  | || ||||| | |||||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaagcgaagtaggatttggatgatcaattca 178610  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 15348603 - 15348481
Alignment:
Q  165 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 264  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  265 cgaataagagacttaaccggtaa 287  Q
    || ||||||||||| ||||||||    
T  15348503 cgtataagagacttcaccggtaa 15348481  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 12200008 - 12199929
Alignment:
Q  205 gaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||  | ||||||||| |||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccgg 12199929  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 12444436 - 12444357
Alignment:
Q  205 gaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||  | ||||||||| |||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccgg 12444357  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 322
Target Start/End: Original strand, 4032264 - 4032410
Alignment:
Q  176 tgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagaga 275  Q
    ||||||||  ||| |||| ||||||||| |||||||||||||||| |||||| |||||||  |||||  | ||||||||  | |||||||| ||||||||    
T  4032264 tgtgtgttttagaggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagaga 4032363  T
Q  276 cttaaccggtaatcttactaagattttggtgatcaattcatcaggca 322  Q
    ||| |  |||| ||| | |||||||| | |||||||||||| |||||    
T  4032364 cttcattggtagtctcagtaagatttggatgatcaattcatgaggca 4032410  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 12195006 - 12194923
Alignment:
Q  201 atgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    |||||||||||||||||| | ||||||||||||||| |||||| ||||||||| | |||||||||  | ||||||||| |||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccgg 12194923  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 12439434 - 12439351
Alignment:
Q  201 atgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    |||||||||||||||||| | ||||||||||||||| |||||| ||||||||| | |||||||||  | ||||||||| |||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccgg 12439351  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 326
Target Start/End: Original strand, 11006332 - 11006460
Alignment:
Q  198 aaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaag 297  Q
    |||||| || ||||||||||||| ||||||||||||||  |||||| ||||||||||  | |||||||| ||||| ||||| ||||| || || |  |||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 11006431  T
Q  298 attttggtgatcaattcatcaggcagata 326  Q
    ||||   |||||||||||| |||||||||    
T  11006432 atttgtatgatcaattcatgaggcagata 11006460  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 11024884 - 11024996
Alignment:
Q  175 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 274  Q
    |||||||||| ||  | ||||| |||||| || |||||||||| |  ||||||||||||||  |||||| ||||||||||| |||||||||| || ||||    
T  11024884 gtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagag 11024983  T
Q  275 acttaaccggtaa 287  Q
    |||| ||||||||    
T  11024984 acttcaccggtaa 11024996  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 11015872 - 11015984
Alignment:
Q  175 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 274  Q
    |||||||||| ||  | ||||| |||||| || |||||||||| |  ||||||||||||||  ||| || ||||||||||| |||||||||| || ||||    
T  11015872 gtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagag 11015971  T
Q  275 acttaaccggtaa 287  Q
    |||| ||||||||    
T  11015972 acttcaccggtaa 11015984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 47452269 - 47452363
Alignment:
Q  190 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 284  Q
    ||||||| ||||||||  ||||||||| ||| |||||||||||||||||||||| ||||| ||| | | ||||| || | ||||||||| |||||    
T  47452269 gtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 21015493 - 21015395
Alignment:
Q  189 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 287  Q
    ||||| || |||||||||| |||||||||| |  | |||||||||||||||| |||||||||||||  | |||||||| | ||||||| | ||||||||    
T  21015493 agtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaa 21015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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