View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17076_high_1 (Length: 318)
Name: NF17076_high_1
Description: NF17076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17076_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 36848128 - 36847832
Alignment:
| Q |
17 |
ataaacttgttgcttcttgcaccctcttttcttatacacatccttattattatttcaaaatattctattcgaagtttacttttggaatatatatgtttat |
116 |
Q |
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| T |
36848128 |
ataaacgtgttgcttcttgcaccctcttttcttatacacatccttattattatttcaaaatattctattcaaagtttacttttggaatatatatgtttat |
36848029 |
T |
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| Q |
117 |
ttt-cattaaatacaagaacaattcctttannnnnnnnn---ccatacgatcctatagctcatttatctccattgattacataataaattaacaatgccg |
212 |
Q |
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||| ||||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36848028 |
ttttcattaaacacaagaacaattcctgtagtttttttttttccatacgatcctatagttcatttatctccattgattacataataaattaacaatgccg |
36847929 |
T |
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| Q |
213 |
atgatcatgcttttatatatttgtaaattcgaaagcctttgccaagtctaataatattatactcttttaacttgtacagttagtgttctacctttgc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36847928 |
atgatcatgcttttatatatttgtaaattcgaaagcctttgccaagtctaataatattagactcttttaacttgtacagttagtgttctacctttgc |
36847832 |
T |
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