View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17076_high_2 (Length: 304)
Name: NF17076_high_2
Description: NF17076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17076_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 39298019 - 39297918
Alignment:
| Q |
132 |
aaaaagtgactcatcaaatctaaaatatcgatggcttattaaatacgttacgtaagactttgtattttctctagtacaatcatcaataaaatgagtcaaa |
231 |
Q |
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| T |
39298019 |
aaaaagtgactcatcaaatctaaaatattgatgactcattaagtacgttatatatgactttgtactttctctagtacaatgatcaataaaatgagtcaaa |
39297920 |
T |
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| Q |
232 |
tc |
233 |
Q |
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|| |
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| T |
39297919 |
tc |
39297918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 39298193 - 39298127
Alignment:
| Q |
43 |
aaggtcactagcaacaatgaagcaacaactatgaggcacaagagagtaatggtccaatccaaaagaa |
109 |
Q |
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| T |
39298193 |
aaggtcactagcaccaatgaagcaacaactatgaggcacaggagagtaatggtctaatccaaaagaa |
39298127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 33800224 - 33800276
Alignment:
| Q |
43 |
aaggtcactagcaacaatgaagcaacaactatgaggcacaagagagtaatggt |
95 |
Q |
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| T |
33800224 |
aaggtcaatagaatcaatgaagcaacaaatatgaggcccaagagagcaatggt |
33800276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 8644477 - 8644530
Alignment:
| Q |
43 |
aaggtcactagcaacaatgaagcaacaactatgaggcacaagagagtaatggtc |
96 |
Q |
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| T |
8644477 |
aaggtcactagcaacaatgaagcaacaaatacgaggcccaagagagcaatggtc |
8644530 |
T |
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