View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17076_low_1 (Length: 350)
Name: NF17076_low_1
Description: NF17076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17076_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 32954892 - 32954648
Alignment:
| Q |
10 |
ataatactaacaaaatctagaagtaatgattaccttagaattcctagtgaagcttgaaatagaccagcaaaaaaggttgaagtaagagctagttgaagaa |
109 |
Q |
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| T |
32954892 |
ataatactaacaaaatctagaagtaatgattaccttagaattcctagtgaagcttgaaatagaccagcaaaaaaggttgaagtaagagctagttgaagaa |
32954793 |
T |
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| Q |
110 |
acagaacaggttctgctgaaggagacacttcttgtctaagcatagatcctaaaacaagtgaagcaatagaaacaggtcctactgctagatcccttgaact |
209 |
Q |
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| T |
32954792 |
acagaacaggttctgctgaaggagacacttcttgtctaagcatagatcctaaaacaagtgaagcaatagaaacaggtcctactgctagatcccttgaact |
32954693 |
T |
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| Q |
210 |
tccaagaacagcataaataagtggaggaacaaaactagaatctgc |
254 |
Q |
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| T |
32954692 |
tccaagaacagcataaataagtggaggaacaaaactagaatctgc |
32954648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 253
Target Start/End: Complemental strand, 32966123 - 32965908
Alignment:
| Q |
38 |
attaccttagaattcctagtgaagcttgaaatagaccagcaaaaaaggttgaagtaagagctagttgaagaaacagaacaggttctgctgaaggagacac |
137 |
Q |
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| T |
32966123 |
attaccttagaattccaagagctgcttgaaaaataccagcaaaacatgttgaagtaaaagctaactgaacaaaaagaccagattctgttgtgggagatac |
32966024 |
T |
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| Q |
138 |
ttcttgtctaagcatagatcctaaaacaagtgaagcaatagaaacaggtcctactgctagatcccttgaacttccaagaacagcataaataagtggagga |
237 |
Q |
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| T |
32966023 |
ttcctctgcaagcatggatcctaatacaagagaagcaatagaaacaggtcccactgctaaatctcttgagcttccaagaacaacataaactagtggtgga |
32965924 |
T |
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| Q |
238 |
acaaaactagaatctg |
253 |
Q |
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| T |
32965923 |
acaaaactagaatctg |
32965908 |
T |
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Back To:
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