View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17076_low_2 (Length: 318)

Name: NF17076_low_2
Description: NF17076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17076_low_2
NF17076_low_2
[»] chr4 (1 HSPs)
chr4 (17-309)||(36847832-36848128)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 36848128 - 36847832
Alignment:
Q  17 ataaacttgttgcttcttgcaccctcttttcttatacacatccttattattatttcaaaatattctattcgaagtttacttttggaatatatatgtttat 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36848128 ataaacgtgttgcttcttgcaccctcttttcttatacacatccttattattatttcaaaatattctattcaaagtttacttttggaatatatatgtttat 36848029  T
Q  117 ttt-cattaaatacaagaacaattcctttannnnnnnnn---ccatacgatcctatagctcatttatctccattgattacataataaattaacaatgccg 212  Q
    ||| ||||||| ||||||||||||||| ||            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36848028 ttttcattaaacacaagaacaattcctgtagtttttttttttccatacgatcctatagttcatttatctccattgattacataataaattaacaatgccg 36847929  T
Q  213 atgatcatgcttttatatatttgtaaattcgaaagcctttgccaagtctaataatattatactcttttaacttgtacagttagtgttctacctttgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36847928 atgatcatgcttttatatatttgtaaattcgaaagcctttgccaagtctaataatattagactcttttaacttgtacagttagtgttctacctttgc 36847832  T

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