View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17077_high_2 (Length: 432)
Name: NF17077_high_2
Description: NF17077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17077_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 48357780 - 48358173
Alignment:
| Q |
18 |
acattttcaggaacatatgtgtatatgtcaccagaggtgatacgatgtgagccttataatgaaaaatgtgatgtatacagttttggagtcatattgaacg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48357780 |
acattttcaggaacatatgtgtatatgtcaccagaggtgatacgatgtgagccttataatgaaaaatgtgatgtatacagttttggagtcatattgaacg |
48357879 |
T |
|
| Q |
118 |
agattctaacaggaaaacatccctacattgagacagaatatggtcctgccaaggtacgtatcatcatcatattgatcatgagcaattcttgttataattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
48357880 |
agattctaacaggaaaacatccctacattgagacagaatatggtcctgccaaggta----tcatcatcatattgatcatgagcaat-------ataattt |
48357968 |
T |
|
| Q |
218 |
cttggctataaaactagaagaaagtcttactctttttaattgtaacatttttctttatgaatacgttgttagattgctatggaagtggtagagggtaagc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48357969 |
cttggctataaaactagaagaaagtcttactctttttaattgtaacatttttatttatgaatacgttgttagattgctatggaagtggtagagggtaagc |
48358068 |
T |
|
| Q |
318 |
tgcggcctacacttccgtcaagggatgatggtgagcatttgggagaattgattgaccttatacgcctttgttgggatggaactccatccactagaccatc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48358069 |
tgcggcctacacttccgtcaagggatgatggtgagcatttgggagaattgattgaccttatacgcctttgttgggatggaactccatccactagaccatc |
48358168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University