View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17077_high_6 (Length: 314)
Name: NF17077_high_6
Description: NF17077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17077_high_6 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 28899511 - 28899198
Alignment:
| Q |
1 |
ttcatttgtctgtgacttattaacattattgaacatttctgcttccttaagagtattaaagaacctctgatctataatattttgttactgatatttgtct |
100 |
Q |
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| T |
28899511 |
ttcatttgtctgtgacttattaacattattgaacatttctgcttccttaagagtataaaagaacctctgatctataatattttgttactgatatttgtct |
28899412 |
T |
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| Q |
101 |
ttccctttctctttatatggcagtggatctcaagggagatggcattgttacaacatcgtattgatctggccaatgaaaagggacggagaagagaatatcc |
200 |
Q |
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| T |
28899411 |
ttccctttctctttatatggcagtggatctcaagggagatggcattgttacaacatcgtattgatctggccaatgaaaagggacggagaagagaatatcc |
28899312 |
T |
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| Q |
201 |
tttcatgatatgtttgttaatgttacctcatattagaagctaaaggccaaaatattatgaattgttaatctgtttcctaatttaacgctgacaatttgtg |
300 |
Q |
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| T |
28899311 |
tttcatgatatgtttgttaatgttacctcatattagaagctaaaggccaaaatattatgaattgttaatctgtttcctaatttaacgctgacaatttgtg |
28899212 |
T |
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| Q |
301 |
ccttaaccatattt |
314 |
Q |
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|||||||||||||| |
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| T |
28899211 |
ccttaaccatattt |
28899198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 28923259 - 28922970
Alignment:
| Q |
16 |
cttattaacattattgaacatttctgcttccttaagagtattaaagaacctctgatctataatattttgttactgatatttgtctttccctttctcttta |
115 |
Q |
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| T |
28923259 |
cttattaacattatagaacatttctgtttgctttggagtataaaagaacctctgatctatcatattttgttactgatatttgtct----cttctgcttta |
28923164 |
T |
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| Q |
116 |
tatggcagtggatctcaagggagatggcattgttacaacatcgtattgatctggccaatgaaaagggacggagaagagaatatcctttcatgatatgttt |
215 |
Q |
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| T |
28923163 |
tatggcagtggatctcaagggagatagaattgttacgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatcctttcatgatatattt |
28923064 |
T |
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| Q |
216 |
gttaatgttacctcatattagaagctaaaggccaaaatattatgaattgttaatctgtttcctaatttaacgctgacaatttgtgccttaaccat |
310 |
Q |
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| T |
28923063 |
agtaatgttatgacatattagaagctaaatgccaaaatgttgtgaattg-tattttgttacctaatttaatgctgacaatttgtgccttaaccat |
28922970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 28913840 - 28913548
Alignment:
| Q |
16 |
cttattaacattattgaacatttctgcttccttaagagtattaaagaacctctgatctataatattttgttactgatatttgtctttccctttct-cttt |
114 |
Q |
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|||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||| | || |
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| T |
28913840 |
cttattaacattattgaacatttctgtttgctttggagtataaaagaacctctgatctatcatattttgttactgatatttgtctct---tttctgcgtt |
28913744 |
T |
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| Q |
115 |
atatggcagtggatctcaagggagatggcattgttacaacatcgtattgatctggccaatgaaaagggacggagaagagaatatcctttcatgatatgtt |
214 |
Q |
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| T |
28913743 |
atatggcagtggatctcaagggagatagaattgttacgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgattt |
28913644 |
T |
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| Q |
215 |
tgttaatgttacctcatattagaagctaaaggccaaaatattatgaattgttaatctgtttcctaatttaacgctgacaatttgtgccttaaccat |
310 |
Q |
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| T |
28913643 |
tattaatgtcacctcctattaaaagctaaatggaaaaatgttgtgaattggtaatttgttccctaatttaatgccaacaatttgtgccttaaccat |
28913548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 28932152 - 28931904
Alignment:
| Q |
16 |
cttattaacattattgaacatttctgcttccttaagagtattaaagaacctctgatctataatattttgttactgatatttgtctttccctttctcttta |
115 |
Q |
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||||||||||| ||||| ||||||||||| ||| | |||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||| |
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| T |
28932152 |
cttattaacatcattgagcatttctgctttctttatggtataaaagaacctctgatctatcatattttgttactgatattggtctttctcttctgcttta |
28932053 |
T |
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| Q |
116 |
tatggcagtggatctcaagggagatggcattgttacaacatcgtattgatctggccaatgaaaagggacggagaagagaatatcctttcatgatatgttt |
215 |
Q |
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| T |
28932052 |
tatggcagtggatctcaagggagattgcgttgttaagaaatcgtattgatctggccaatgaaaagggatggaggagagaatatcctttcatgatattttt |
28931953 |
T |
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| Q |
216 |
gttaatgtt-acctcatattagaagctaaaggccaaaatattatgaatt |
263 |
Q |
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|||||||| |||||||||||||||||||||||||| || |||||| |
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| T |
28931952 |
attaatgttgtgttcatattagaagctaaaggccaaaatgttgtgaatt |
28931904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 28889530 - 28889232
Alignment:
| Q |
16 |
cttattaacattattgaacatttctgcttccttaagagtattaaagaacctctgatctataatattttgttactgatatttgtctttccctttct-cttt |
114 |
Q |
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||||||||||| ||||| |||||||| |||||| ||||||| ||||||| | |||||||| ||||||||| ||| |||||||||| || |||| |||| |
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| T |
28889530 |
cttattaacatcattgaccatttctgattcctttagagtataaaagaacatatgatctatcatattttgtaactaatatttgtctctc---ttctacttt |
28889434 |
T |
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| Q |
115 |
atatggcagtggatctcaagggagatggcattgttacaacatcgtattgatctggccaatgaaaagggacggagaagagaatatcctttcatgatatgtt |
214 |
Q |
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| T |
28889433 |
acatggcagtggatctcaagggagagagaattgttacgaaatcgtattgatcgggctaatgaaaagggatggaggagagaatatccttttgcgatgtttt |
28889334 |
T |
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| Q |
215 |
tgtt-aatgttacctcatattagaagctaaaggccaaaatattatgaattgttaatctgttt-cctaatttaacgctgacaatttgtgccttaaccatat |
312 |
Q |
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| T |
28889333 |
tattaaatgatacctcatattaaaagctaaagggaaaaatgttgtgaattggtaatttgtttccctaatttaatgccaacaatttgtgccttaaccatat |
28889234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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