View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17077_high_8 (Length: 291)
Name: NF17077_high_8
Description: NF17077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17077_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 941176 - 940910
Alignment:
| Q |
1 |
agaatagatccccaaatgacagcatgagtcacccaataccatctaacaacatccatagccaaatgtaaattgaccaaaataaccactgcaagagtccaaa |
100 |
Q |
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| T |
941176 |
agaatagatccccaaatgacagcatgagtcacccaataccatctaacaacatccatagccaaatgtaaattgaccaaaataaccactgcaagagtccaaa |
941077 |
T |
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| Q |
101 |
ggtctcctatgcttgctatatcaatagtacttttccaatatgcaaagagtggaggccaaaatacaaccatgctttgccacaaagtatcaaccattgttaa |
200 |
Q |
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| T |
941076 |
ggtctcctatgcttgctatatcaatagtacttttccaatatgcaaagagtggaggccaaaatacaaccatgctttgccacaaagtatcaaccattgttaa |
940977 |
T |
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| Q |
201 |
cataaacaatttcttgttgtaggcttcatctctttgtccagcactataaagttgaggatactttagg |
267 |
Q |
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| T |
940976 |
cataaacaatttcttgttgtaggcttcatctctttgtccagcactataaagttgaggatactttagg |
940910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 16945118 - 16944909
Alignment:
| Q |
49 |
acatccatagccaaatgtaaattgaccaaaataaccactgcaagagtccaaaggtctcctatgcttgctatatcaatagtacttttccaatatgcaaaga |
148 |
Q |
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| T |
16945118 |
acatccatggccaagtgcaaattgaccaaaataactatcgaaatagtccaaagatcccccatacttgcgatatctacagtgcttccccaatatgcaaaga |
16945019 |
T |
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| Q |
149 |
gtggaggccaaaatacaaccatgctttgccacaaagtatcaaccattgttaacataaacaatttcttgttgtaggcttcatctctttgtccagcactata |
248 |
Q |
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| T |
16945018 |
gaggaacaaaaaagacaacaacgctttgccataacgtatcggctatcgtcaaccaaaacaattttttgttgtaggcctcttgtctttgtccagccccata |
16944919 |
T |
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| Q |
249 |
aagttgagga |
258 |
Q |
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| T |
16944918 |
aagctgagga |
16944909 |
T |
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