View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17077_low_1 (Length: 603)
Name: NF17077_low_1
Description: NF17077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17077_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 33126563 - 33127150
Alignment:
| Q |
1 |
aatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcgactatatatctaacaagaatgaataaacataagat |
100 |
Q |
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| T |
33126563 |
aatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcgactatacatctaacaagaatgaataaacataagat |
33126662 |
T |
|
| Q |
101 |
agaaatatactaacacttagagagggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccct |
200 |
Q |
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| T |
33126663 |
agaaatatactaacacttagagagggctgtagaagactttggatcaaaaccaatgatcaaagtgagcatagggataaaaattcctccacctcctacccct |
33126762 |
T |
|
| Q |
201 |
cctacacttcccaatgctgctccaaaaaatccgacaatagaccctacgacaattctccaaccaaacttcatttcctgctcaacaaaaccattaccatgca |
300 |
Q |
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| T |
33126763 |
cctacacttcccaatgctgctccaaaaaatccgacaatagaccctacgacaattctccaaccaaacttcatttcctgctcaacaaaacgattaccatgca |
33126862 |
T |
|
| Q |
301 |
tcatcaccaatttcataacatcatgtcaatattataaatgacgtaataaacaacaaaaaacataagtgtttgataaactcacaggccaaacacgttcata |
400 |
Q |
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| T |
33126863 |
tcatcaccaatttcataacatcatgtcaatattataaatgacgtaataaacaacaaaaaacataagtgtttgataaactcacaggccaaacacgttcata |
33126962 |
T |
|
| Q |
401 |
ggacgactctccactataccagaagaaacttcnnnnnnncatgacaacaatttctggtttttcgtcttccaaaactctttcggctaaactaacatgatag |
500 |
Q |
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| T |
33126963 |
ggacgactctccactataccagaagaaacttgtttttttcatgacaacaatttctggtttttcgtcttccaaaactctttcggctaaactaacgtgatag |
33127062 |
T |
|
| Q |
501 |
atcataataagactccacgagactagccatataattgttgatacttctcttgatattgccatctttttaacttctaaagccatgtatg |
588 |
Q |
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| T |
33127063 |
atcataataagactccacgagactagccatataattgttgataattctcttgatattgccatctttttaacttctaaagccatgtatg |
33127150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 125 - 283
Target Start/End: Complemental strand, 7568728 - 7568570
Alignment:
| Q |
125 |
ggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctcca |
224 |
Q |
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||||||||||||||| |||||||| ||||| ||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
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| T |
7568728 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctccc |
7568629 |
T |
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| Q |
225 |
aaaaatccgacaatagaccctacgacaattctccaaccaaacttcatttcctgctcaac |
283 |
Q |
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|||||||| | ||| || || || | |||| ||||| |||| ||||||||||||||||| |
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| T |
7568628 |
aaaaatccaataattgatccaactataattttccaatcaaatttcatttcctgctcaac |
7568570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 32663744 - 32663699
Alignment:
| Q |
24 |
tgagacgtgagaaagataattgaaacgtaaatccaaacatcgacta |
69 |
Q |
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| T |
32663744 |
tgagacgtgagaaagacaattcaaatgtaaatccaaacattgacta |
32663699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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