View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17077_low_12 (Length: 264)
Name: NF17077_low_12
Description: NF17077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17077_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 28899184 - 28898931
Alignment:
| Q |
1 |
cagtacatggaccaaaaacagaagcttgggtctccatctgaacaattgcgtttattaagtgaaattccaaaagtaattcctgaaatggttgataccaatc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28899184 |
cagtacatggaccgaaaacagaagcttgggtctccatctgaacaattgcgtttattaagtgaaattccaaaagtaattcctgaaatggttgataccaatc |
28899085 |
T |
|
| Q |
101 |
tgtcaccggaagattcctcaagaaaagataagctagagcaaaaagatttgccagaatcagccattggagagacttgtaactcttttgcacaatactccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28899084 |
tgtcaccggaagattcctcaagaaaagataagctagagcaaaaagatttgccagaatcagccattggagagacttgtaactcttttgcacaatactccac |
28898985 |
T |
|
| Q |
201 |
acatgatggtttttcccaatgtctggataagagagcagatgttgtaggtctgtg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28898984 |
acatgatggtttttcccaatgtctggataagagagcagatgttgtaggtctgtg |
28898931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28889218 - 28888966
Alignment:
| Q |
1 |
cagtacatggaccaaaaacagaagcttgggtctccatctgaacaattgcgtttattaagtgaaattccaaaagtaattcctgaaatggttgataccaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || ||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
28889218 |
cagtacatggaccaaaaacagaagcttgagtctccgtcagaacaatcacatttattaaatgaaattccaaaagtaattcctgaaatgattgataccagtc |
28889119 |
T |
|
| Q |
101 |
tgtcaccggaagattcctcaagaaaagataagctagagcaaaaagatttgccagaatcagccattggagagacttgtaactcttttgcacaatactccac |
200 |
Q |
| |
|
||||||| ||| ||||||||| || ||||||||| ||||| || ||||| ||||||| ||||||||| ||||||||||||||| ||| ||| |||||||| |
|
|
| T |
28889118 |
tgtcaccagaaaattcctcaaaaagagataagcttgagcacaatgatttaccagaattagccattggtgagacttgtaactctgttggacagtactccac |
28889019 |
T |
|
| Q |
201 |
acatgatggtttttcccaatgtctggataagagagcagatgttgtaggtctgt |
253 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
28889018 |
acatgatggttttgctcaatgtctggataagagaacagatgttttaggtctgt |
28888966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28913530 - 28913278
Alignment:
| Q |
1 |
cagtacatggaccaaaaacagaagcttgggtctccatctgaacaattgcgtttattaagtgaaattccaaaagtaattcctgaaatggttgataccaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28913530 |
cagtacatggaccaaaaacagaagcttgagtctgcatccgaacaatcacgtttattaagtgaaattccgaaagtaattcctgaactggttggtaccaatc |
28913431 |
T |
|
| Q |
101 |
tgtcaccggaagattcctcaagaaaagataagctagagcaaaaagatttgccagaatcagccattggagagacttgtaactcttttgcacaatactccac |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | || ||||| ||||||| || ||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
28913430 |
tgtcaccagaagattcctcaagaaaagataagtttgaacaaaatgatttgcaagttgtagccattggagagacttgtaactctggaggacagtactccac |
28913331 |
T |
|
| Q |
201 |
acatgatggtttttcccaatgtctggataagagagcagatgttgtaggtctgt |
253 |
Q |
| |
|
|||| |||||||| | | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
28913330 |
acataatggttttgctctatgtctggataagagaacagatgttgtaggtctgt |
28913278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 28922952 - 28922754
Alignment:
| Q |
1 |
cagtacatggaccaaaaacagaagcttgggtctccatctgaacaattgcgtttattaagtgaaattccaaaagtaattcctgaaatggttgataccaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || | ||||||| |||||||||||||||||||||||||||||||| ||| |||| | |||||||| |
|
|
| T |
28922952 |
cagtacatggaccaaaaacagaagcttgagtctgcagccgaacaatcacgtttattaagtgaaattccaaaagtaattccggaactggtcggtaccaatc |
28922853 |
T |
|
| Q |
101 |
tgtcaccggaagattcctcaagaaaagataagctagagcaaaaagatttgccagaatcagccattggagagacttgtaactcttttgcacaatactcca |
199 |
Q |
| |
|
|||| || |||||||| ||||||||||||| ||||||| |||||||||||||||||| || |||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
28922852 |
tgtcgccagaagattcttcaagaaaagatatgctagagaaaaaagatttgccagaattagacattggagagacttgtgacgcttttggacaatactcca |
28922754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 28931833 - 28931651
Alignment:
| Q |
1 |
cagtacatggaccaaaaacagaagcttgggtctccatctgaacaattgcgtttattaagtgaaattccaaaagtaattcctgaaatggttgataccaatc |
100 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
28931833 |
cagtacatggaccgaaaacagaagctcgagtctccatcagaacaatcacgtttattaggtgaaatcccagaagtaattcctgaaatggttgataccaatc |
28931734 |
T |
|
| Q |
101 |
tgtcaccggaagattcctcaagaaaagataagctagagcaaaaagatttgccagaatcagccattggagagacttgtaactct |
183 |
Q |
| |
|
| || || ||| | |||||||||||||||||| | ||||||| ||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
28931733 |
tttccccagaaaaatcctcaagaaaagataaggttgagcaaattgatttgccagatttagttattggagagacttgtaactct |
28931651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 28922738 - 28922678
Alignment:
| Q |
194 |
actccacacatgatggtttttcccaatgtctggataagagagcagatgttgtaggtctgtg |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28922738 |
actccacacatgatggttttacccaatgtccggataagagagcagatgttgtaggtctgtg |
28922678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University