View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17077_low_13 (Length: 230)
Name: NF17077_low_13
Description: NF17077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17077_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 7285145 - 7285341
Alignment:
| Q |
15 |
caaaggtacgatgtaaaagagagtaggaaagtcgtaacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaac |
114 |
Q |
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| T |
7285145 |
caaaggtacgatgtaaaagagtgtaggaaagtcgtaacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaac |
7285244 |
T |
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| Q |
115 |
ttagtaatgatgtggcaactgcttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgc |
211 |
Q |
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| T |
7285245 |
ttagtaatgatgtggcaactgcttatttgaaaagaagacttaagatcaagaatgggttgttgggtgaaggagatcatttccatatgaagtgtcttgc |
7285341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 6838901 - 6838827
Alignment:
| Q |
137 |
ttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgc |
211 |
Q |
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| T |
6838901 |
ttatttgaaacaaagacttaagatcaagaatgggttgttgggtgaaggagatcacttccatatgaggtgtgttgc |
6838827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 6839365 - 6839259
Alignment:
| Q |
15 |
caaaggtacgatgtaaaagagagtaggaaagtcgtaacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaac |
114 |
Q |
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||||||||| ||| || |||| ||||||||| ||||||||||| |||||||| |||| |||||| |||| || ||||||||||||| ||||||| ||| |
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| T |
6839365 |
caaaggtacaatgcaatagagtgtaggaaagctttaacaaactttgtcatccttgatgaacatgcctttagggttgtagaaggtgagggatttaagcaac |
6839266 |
T |
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| Q |
115 |
ttagtaa |
121 |
Q |
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| T |
6839265 |
tttgtaa |
6839259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 15999908 - 15999982
Alignment:
| Q |
137 |
ttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgc |
211 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| |||| |
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| T |
15999908 |
ttatttgaaaaaaagacttaagatcaagaatgggttgttgggtgaaggggatcacttccatatgaggtgtgttgc |
15999982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 15999436 - 15999542
Alignment:
| Q |
15 |
caaaggtacgatgtaaaagagagtaggaaagtcgtaacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaac |
114 |
Q |
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||||||||| ||| || |||| ||||||||| ||||||| ||| |||||||| |||| |||||| |||| || ||||||||||||| ||||||| ||| |
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| T |
15999436 |
caaaggtacaatgcaatagagtgtaggaaagctataacaaagtttgtcatccttgatgaacatgcctttagggttgtagaaggtgagggatttaagcaac |
15999535 |
T |
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| Q |
115 |
ttagtaa |
121 |
Q |
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|| |||| |
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|
| T |
15999536 |
tttgtaa |
15999542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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