View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17077_low_9 (Length: 296)
Name: NF17077_low_9
Description: NF17077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17077_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 137 - 285
Target Start/End: Complemental strand, 36998195 - 36998050
Alignment:
| Q |
137 |
tggtttcgacatagccttcttccaaagaaacattcaaaactgatgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaaca |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
36998195 |
tggtttcgacatagccttcttccaaagaaacgttaaaaactgatgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaaca |
36998096 |
T |
|
| Q |
237 |
gccatatattaatgttagattttacaaccttataatgctcacaggttct |
285 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
36998095 |
gccatatat---tgttagattttacaaccttattatgctcacagtttct |
36998050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 36998050 - 36998174
Alignment:
| Q |
12 |
agaacctgtgagcattataaggttgtaaaatctaacattaatatatggctgttttcaggtaaggctttgaaggacttaatgtgaaaagctgctaaggcaa |
111 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
36998050 |
agaaactgtgagcataataaggttgtaaaatctaaca---atatatggctgttttcaggtaaggctttgaaggatttaatgtggaaagctgctaaggcaa |
36998146 |
T |
|
| Q |
112 |
acctcatcagttttgaatgtttctttgg |
139 |
Q |
| |
|
|||||||||||||| || |||||||||| |
|
|
| T |
36998147 |
acctcatcagtttttaacgtttctttgg |
36998174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University