View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17078_low_1 (Length: 467)
Name: NF17078_low_1
Description: NF17078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17078_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 5 - 453
Target Start/End: Complemental strand, 55709023 - 55708576
Alignment:
| Q |
5 |
gctatattattctgagatatagattcttgttgtggcaagctgaacaattggaagagctagcctgaccaccaggatcatcaagattttccatgggcttcaa |
104 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55709023 |
gctaaattattttgagatatagattcttgttgtggcaagctgaacaattggaagagctagcctgatcaccaggatcatcaagattttccatgggcttcaa |
55708924 |
T |
|
| Q |
105 |
tgacaaaactgaggagcttgcttgatatgcattgcgttgtctgaagcaaaacaagccagaaaaaacctgcagaagcgcaatcagcacatgcaattgtaaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55708923 |
tgacaaaactgaggagcttgcttgatatgcattgcgttgcctgaagcaaaacaagccagaaaaaacctgcagaagcgcaatcagcacatgcaattgtaaa |
55708824 |
T |
|
| Q |
205 |
ttagtcaaattggaacaggaaagtgcaaaaatacaaaacaaacttaatggtgcatcaagattcataacagttcatttgcttcagttaattctttagtatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55708823 |
ttagtcaaattggaacaggaaagtgcaaaaatagaaaacaaacttaatggtgcatcaagattcataacagttcatttgcttcagttaattctttagtatt |
55708724 |
T |
|
| Q |
305 |
gaagcaaaattccttttaagaggttcataattttttgcgagttgtttccgtatttctgataccccatcattcatgtgcttctgtttagacaacacaagtt |
404 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
55708723 |
gaagcaaaattccttttaagaggttcagaattttttgcgagttgtttccgtatttctgataccccgtcattcatgtgcttctg-ttagacaacacaagtt |
55708625 |
T |
|
| Q |
405 |
ccaagaagttcaaaattaacagttcgaaactcactttaaatgggttttc |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55708624 |
ccaagaagttcaaaattaacagttcgaaactcactttaaatgggttttc |
55708576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 49444801 - 49444338
Alignment:
| Q |
17 |
tgagatatagattcttg-ttgtggcaagctgaacaattggaagagctagcctgaccaccaggatcatcaagattttccatgggcttcaatgacaaaactg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || | |||| | |||||||||||||||||||||| |
|
|
| T |
49444801 |
tgagatatagattcttggttgtggcaagctgagcaattggaagagctagcgtgaccaccaggatcctctaaatttgcaatgggcttcaatgacaaaactg |
49444702 |
T |
|
| Q |
116 |
aggagcttgcttgatatgcattgcgttgtctgaagcaaaacaagccagaaaaaacctgcagaagc-gcaatcagcacatgcaattgtaaattagtcaaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| |||| |||| |||||||||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
49444701 |
aggagcttgcttgatatgcattgcgttgcctcaagcaaaataagctagaagaaacctgcagaagcggcaatcaacacatgcaattgtaaattattcaaat |
49444602 |
T |
|
| Q |
215 |
tggaacaggaaagtgcaaaaatacaaaacaaa-------------cttaatggtgcatcaagattcataacagttcatttgcttcagttaatt-ctttag |
300 |
Q |
| |
|
|||||||| || ||| |||| || |||||||| |||| |||| ||||||||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
49444601 |
tggaacagtaaggtgaaaaagtagaaaacaaaggattaaattcttcttagtggtccatcaagattcatgcctgttcatttgcttcagttaattgctttag |
49444502 |
T |
|
| Q |
301 |
tattgaagcaaaattccttttaagaggttcataat-tttttgcgagttgtttccgta--------tttctgataccccatcattcatgtgcttctgttta |
391 |
Q |
| |
|
|| ||||||| |||||||||||| |||||| ||| ||| |||||| | |||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
49444501 |
tactgaagcataattccttttaaaaggttccgaatctttcaccgagttctctccgtatttctggctttctgataccccatcattcatgtgcttcagttcc |
49444402 |
T |
|
| Q |
392 |
gacaacacaagttccaagaagttcaaaattaacagttcgaaactcacttt---aaatgggttttc |
453 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
49444401 |
gacaacacaagttcctagaagttcaaaattaacagctc-aaactcactttcgaaaatgggttttc |
49444338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University