View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17078_low_3 (Length: 336)
Name: NF17078_low_3
Description: NF17078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17078_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 25815577 - 25815894
Alignment:
| Q |
1 |
attaacaagctgaacgtgtagttgtcatgagtgtagaatcccagaattgtttgtattgttttgctatttggttattttgttaacaagtttgtgcaataat |
100 |
Q |
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| T |
25815577 |
attaacaagctgaacgtgtagttgtcatgagtgtagaatcccagaattgtttgtattgttttgctatttggttattttgttaacaaggttgtgcaataat |
25815676 |
T |
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| Q |
101 |
ttaccattgtttgttcttatttttagaattactgttgtgcataaactatgatattaaacatttaaaattacaccaatacatgttaatttcctagttattg |
200 |
Q |
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| T |
25815677 |
ttaccattgtttgttcttatttttagaattacagttgtgcataaactatgatattaaacatttaaaattacaccaatacatgttaatttcctagttattg |
25815776 |
T |
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| Q |
201 |
atgattttgtagcaaatttagcaaaaacaagattgtcttaagggagcaggttttgaaatggaggagcagcaacaagatgatgaatttatgatgtatagat |
300 |
Q |
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| T |
25815777 |
atgattttgtagcaaatttagcaaaaacaagattgccttaagggagcaggttttgaaatggaggagcagcaacaagatgatgaatttatgatgtatagat |
25815876 |
T |
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| Q |
301 |
tcaaagtggagcgttgtt |
318 |
Q |
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| T |
25815877 |
tcaaagtggagcgttgtt |
25815894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 25821412 - 25821558
Alignment:
| Q |
133 |
tgttgtgcataaactatgatattaaacatttaaaa-ttacaccaatacatgtt---aatttcctagttattgatgattttgtagcaaatttagcaaaaac |
228 |
Q |
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| T |
25821412 |
tgttatgcatgaactatgatattaaacatttaaaagttaaactaatacttgttgccaatttcctggtgattgataattttgtaacaaatatagctgaacc |
25821511 |
T |
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| Q |
229 |
aagattgtcttaagggagcaggttttgaaatggaggagcagcaacaa |
275 |
Q |
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| T |
25821512 |
aagattgccttaagggagcaggttttgaaatggtgaagcagaaacaa |
25821558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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